BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5594 1076727 1076999 91 !not a gene!
         (91 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H69035 conserved hypothetical protein MTH1263 - Methanobact...    84  3e-16
sp|Q58074|Y660_METJA HYPOTHETICAL PROTEIN MJ0660 >gi|2128431|pir...    82  1e-15
gi|11497896 conserved hypothetical protein [Archaeoglobus fulgid...    67  5e-11

>pir||H69035 conserved hypothetical protein MTH1263 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2622377|gb|AAB85752.1| (AE000893) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 73
          
 Score = 84.3 bits (205), Expect = 3e-16
 Identities = 40/71 (56%), Positives = 54/71 (75%), Gaps = 3/71 (4%)

Query: 24 GDKGRRMEA---PVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGDEVEIVINSV 80
          GD   R E    PV VGE Y+VKIE +G+ GDGIAR++GFV+FVP   VGDEV+I I++ 
Sbjct: 3  GDNYYRKETYSTPVNVGEEYEVKIEDLGRDGDGIARVEGFVVFVPGAGVGDEVKIRISAT 62

Query: 81 KKRFAFAEIIE 91
          +++FAFAE++E
Sbjct: 63 RRKFAFAEVVE 73


>sp|Q58074|Y660_METJA HYPOTHETICAL PROTEIN MJ0660 >gi|2128431|pir||D64382 hypothetical
          protein MJ0660 - Methanococcus jannaschii
          >gi|1591373|gb|AAB98653.1| (U67513) conserved
          hypothetical protein [Methanococcus jannaschii]
          Length = 77
          
 Score = 81.9 bits (199), Expect = 1e-15
 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 2/79 (2%)

Query: 12 MYGGKGGKRKFTGDKGRRMEAPVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGD 71
          M+  KG +R    ++ RR   PVK GE Y V IE MG+GGDGIAR++GFV+FVP T+ G+
Sbjct: 1  MFNNKG-RRNVRNNEVRR-NVPVKEGETYTVTIEDMGRGGDGIARVEGFVVFVPETQKGE 58

Query: 72 EVEIVINSVKKRFAFAEII 90
           V + I +VK +FAFAE I
Sbjct: 59 TVNVKITAVKSKFAFAEKI 77


>gi|11497896 conserved hypothetical protein [Archaeoglobus fulgidus]
          >gi|7482986|pir||H69284 conserved hypothetical protein
          AF0280 - Archaeoglobus fulgidus
          >gi|2650356|gb|AAB90953.1| (AE001085) conserved
          hypothetical protein [Archaeoglobus fulgidus]
          Length = 71
          
 Score = 66.7 bits (160), Expect = 5e-11
 Identities = 30/59 (50%), Positives = 44/59 (73%)

Query: 33 PVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGDEVEIVINSVKKRFAFAEIIE 91
          PV+VG+  +V+IE++G  GDGIA++ GFV+FVP  KV D V I I  V +++ FAE++E
Sbjct: 13 PVEVGDIREVRIEAVGSEGDGIAKVDGFVVFVPGVKVDDVVTIRITKVLRKYGFAEVVE 71


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.142    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36558784
Number of Sequences: 2977
Number of extensions: 1451869
Number of successful extensions: 2517
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2514
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 189,106,746
effective HSP length: 49
effective length of query: 42
effective length of database: 159,780,883
effective search space: 6710797086
effective search space used: 6710797086
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)