BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PABs5594 1076727 1076999 91 !not a gene! (91 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||H69035 conserved hypothetical protein MTH1263 - Methanobact... 84 3e-16 sp|Q58074|Y660_METJA HYPOTHETICAL PROTEIN MJ0660 >gi|2128431|pir... 82 1e-15 gi|11497896 conserved hypothetical protein [Archaeoglobus fulgid... 67 5e-11 >pir||H69035 conserved hypothetical protein MTH1263 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2622377|gb|AAB85752.1| (AE000893) conserved protein [Methanobacterium thermoautotrophicum] Length = 73 Score = 84.3 bits (205), Expect = 3e-16 Identities = 40/71 (56%), Positives = 54/71 (75%), Gaps = 3/71 (4%) Query: 24 GDKGRRMEA---PVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGDEVEIVINSV 80 GD R E PV VGE Y+VKIE +G+ GDGIAR++GFV+FVP VGDEV+I I++ Sbjct: 3 GDNYYRKETYSTPVNVGEEYEVKIEDLGRDGDGIARVEGFVVFVPGAGVGDEVKIRISAT 62 Query: 81 KKRFAFAEIIE 91 +++FAFAE++E Sbjct: 63 RRKFAFAEVVE 73 >sp|Q58074|Y660_METJA HYPOTHETICAL PROTEIN MJ0660 >gi|2128431|pir||D64382 hypothetical protein MJ0660 - Methanococcus jannaschii >gi|1591373|gb|AAB98653.1| (U67513) conserved hypothetical protein [Methanococcus jannaschii] Length = 77 Score = 81.9 bits (199), Expect = 1e-15 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 2/79 (2%) Query: 12 MYGGKGGKRKFTGDKGRRMEAPVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGD 71 M+ KG +R ++ RR PVK GE Y V IE MG+GGDGIAR++GFV+FVP T+ G+ Sbjct: 1 MFNNKG-RRNVRNNEVRR-NVPVKEGETYTVTIEDMGRGGDGIARVEGFVVFVPETQKGE 58 Query: 72 EVEIVINSVKKRFAFAEII 90 V + I +VK +FAFAE I Sbjct: 59 TVNVKITAVKSKFAFAEKI 77 >gi|11497896 conserved hypothetical protein [Archaeoglobus fulgidus] >gi|7482986|pir||H69284 conserved hypothetical protein AF0280 - Archaeoglobus fulgidus >gi|2650356|gb|AAB90953.1| (AE001085) conserved hypothetical protein [Archaeoglobus fulgidus] Length = 71 Score = 66.7 bits (160), Expect = 5e-11 Identities = 30/59 (50%), Positives = 44/59 (73%) Query: 33 PVKVGERYKVKIESMGKGGDGIARIKGFVIFVPHTKVGDEVEIVINSVKKRFAFAEIIE 91 PV+VG+ +V+IE++G GDGIA++ GFV+FVP KV D V I I V +++ FAE++E Sbjct: 13 PVEVGDIREVRIEAVGSEGDGIAKVDGFVVFVPGVKVDDVVTIRITKVLRKYGFAEVVE 71 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.320 0.142 0.419 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36558784 Number of Sequences: 2977 Number of extensions: 1451869 Number of successful extensions: 2517 Number of sequences better than 1.0e-10: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2514 Number of HSP's gapped (non-prelim): 3 length of query: 91 length of database: 189,106,746 effective HSP length: 49 effective length of query: 42 effective length of database: 159,780,883 effective search space: 6710797086 effective search space used: 6710797086 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.8 bits) S2: 158 (66.0 bits)