BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5604 1079888 1080148 87 !not a gene!
         (87 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (st...    98  3e-20

>pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (strain Orsay)
           >gi|5458814|emb|CAB50301.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 404
           
 Score = 97.5 bits (239), Expect = 3e-20
 Identities = 49/71 (69%), Positives = 58/71 (81%), Gaps = 3/71 (4%)

Query: 14  LNLMGSFPFGPKANEPLAEDPVGLMMLVVEANPLHHRDALIIATKIGAGRNGLKFLL--- 70
           LNL+G FPF PKANEPLAEDPVGLMMLVVEAN LHHR+ALIIATK GAG NG K ++   
Sbjct: 324 LNLLGLFPFSPKANEPLAEDPVGLMMLVVEANLLHHRNALIIATKTGAGGNGKKNIILAW 383

Query: 71  PVNKFSNLHNI 81
            ++ F +L+N+
Sbjct: 384 DLDDFKSLNNV 394


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.413 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32404562
Number of Sequences: 2977
Number of extensions: 1119396
Number of successful extensions: 1530
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 1
length of query: 87
length of database: 189,106,746
effective HSP length: 49
effective length of query: 38
effective length of database: 159,780,883
effective search space: 6071673554
effective search space used: 6071673554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 158 (66.0 bits)