BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5761 1141104 1141337 78 !not a gene!
         (78 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75097 polysaccharide biosynthesis related protein PAB0783 ...    84  2e-16

>pir||H75097 polysaccharide biosynthesis related protein PAB0783 - Pyrococcus
           abyssi (strain Orsay) >gi|5458597|emb|CAB50085.1|
           (AJ248286) polysaccharide biosynthesis related protein
           [Pyrococcus abyssi]
           Length = 511
           
 Score = 84.3 bits (205), Expect = 2e-16
 Identities = 38/77 (49%), Positives = 60/77 (77%)

Query: 1   MKPLIISFVLLGLIQGLHLRVPNIWYAVPVLAVFLGVYFFLILLSRSVDKEDVELLLAVE 60
           +KPL I  +L+G+I+ +HL V NIWYA+ +L + L VY  L+L+ +S+D+ED+EL+L +E
Sbjct: 433 LKPLGIGVLLVGMIKAVHLNVGNIWYALILLGLILVVYSLLVLVVKSLDREDLELMLEIE 492

Query: 61  RKLGVDLKIIKKILRRF 77
           +KLG++L I+K  L+RF
Sbjct: 493 KKLGLNLGILKNFLKRF 509


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.335    0.154    0.445 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25814176
Number of Sequences: 2977
Number of extensions: 847510
Number of successful extensions: 4218
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4217
Number of HSP's gapped (non-prelim): 1
length of query: 78
length of database: 189,106,746
effective HSP length: 46
effective length of query: 32
effective length of database: 161,576,344
effective search space: 5170443008
effective search space used: 5170443008
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.5 bits)
S2: 157 (65.6 bits)