BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5882 1183089 1183376 96 !not a gene!
         (96 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (st...    67  6e-11

>pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (strain Orsay)
           >gi|5458814|emb|CAB50301.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 404
           
 Score = 66.7 bits (160), Expect = 6e-11
 Identities = 33/49 (67%), Positives = 40/49 (81%), Gaps = 3/49 (6%)

Query: 5   EADEPLAEDPVGPVMLVVEANLLHHRNTLAISYIETKIGAGGNGRSHSV 53
           +A+EPLAEDPVG +MLVVEANLLHHRN L I+   TK GAGGNG+ + +
Sbjct: 335 KANEPLAEDPVGLMMLVVEANLLHHRNALIIA---TKTGAGGNGKKNII 380


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.136    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37518511
Number of Sequences: 2977
Number of extensions: 1272961
Number of successful extensions: 2359
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2358
Number of HSP's gapped (non-prelim): 1
length of query: 96
length of database: 189,106,746
effective HSP length: 50
effective length of query: 46
effective length of database: 159,182,396
effective search space: 7322390216
effective search space used: 7322390216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)