BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6151 1275275 1275523 83 !not a gene!
         (83 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71120 hypothetical protein PH0733 - Pyrococcus horikoshii ...   111  1e-24

>pir||F71120 hypothetical protein PH0733 - Pyrococcus horikoshii
          >gi|3257141|dbj|BAA29824.1| (AP000003) 150aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 150
          
 Score =  111 bits (276), Expect = 1e-24
 Identities = 58/82 (70%), Positives = 65/82 (78%)

Query: 1  MNMGFPLTRIISVVLSNSATLTSSFLFNIFPAISSPNIWESCAIIPFTSFLLSGCLTFSS 60
          MN+G  LTRIISVVLSNSATLTSSFL +IF AISSPNIW++ AII  TSFLL+GC  F+S
Sbjct: 1  MNIGLSLTRIISVVLSNSATLTSSFLLSIFLAISSPNIWDNWAIISLTSFLLNGCFIFNS 60

Query: 61 NSLTPYFIVYFPCSFSRIWSVV 82
             T YFIVY  C FS IWSV+
Sbjct: 61 ILNTSYFIVYRFCCFSWIWSVI 82


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.138    0.440 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30429047
Number of Sequences: 2977
Number of extensions: 1018589
Number of successful extensions: 2470
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2469
Number of HSP's gapped (non-prelim): 1
length of query: 83
length of database: 189,106,746
effective HSP length: 46
effective length of query: 37
effective length of database: 161,576,344
effective search space: 5978324728
effective search space used: 5978324728
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 158 (66.0 bits)