BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6176 1282776 1283060 95 !not a gene!
         (95 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71118 hypothetical protein PH0719 - Pyrococcus horikoshii ...   100  5e-21

>pir||H71118 hypothetical protein PH0719 - Pyrococcus horikoshii
          >gi|3257127|dbj|BAA29810.1| (AP000003) 112aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 112
          
 Score = 99.8 bits (245), Expect = 5e-21
 Identities = 49/56 (87%), Positives = 53/56 (94%)

Query: 40 MVSLKLSPFLTLLVEASANPMTAPPKRCIALSKLNLVLVDGSKNSVARIFPFAYSS 95
          MVSL+LSPFLTLLVEASANP+T PPKRCIALSKLNLVLVDGSKN+VA IFP AYS+
Sbjct: 1  MVSLRLSPFLTLLVEASANPITEPPKRCIALSKLNLVLVDGSKNNVANIFPLAYSN 56


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.130    0.367 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30004406
Number of Sequences: 2977
Number of extensions: 825974
Number of successful extensions: 2164
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2163
Number of HSP's gapped (non-prelim): 1
length of query: 95
length of database: 189,106,746
effective HSP length: 55
effective length of query: 40
effective length of database: 156,189,961
effective search space: 6247598440
effective search space used: 6247598440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 158 (66.0 bits)