BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6259 1321486 1321734 83 !not a gene!
         (83 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71114 hypothetical protein PH0683 - Pyrococcus horikoshii ...   136  3e-32

>pir||D71114 hypothetical protein PH0683 - Pyrococcus horikoshii
          >gi|3257091|dbj|BAA29774.1| (AP000003) 107aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 107
          
 Score =  136 bits (340), Expect = 3e-32
 Identities = 75/86 (87%), Positives = 77/86 (89%), Gaps = 3/86 (3%)

Query: 1  MKVLTPAALAPTRAEIAECSLSTFMNSASNSPFATNSLIFSGTSVDGVIGNAAITFGLAS 60
          MKVLTPAALAPT AEIAECSLSTFMNSAS+SPFATNSLIFSGT VDGVIGNAAIT G AS
Sbjct: 1  MKVLTPAALAPTTAEIAECSLSTFMNSASSSPFATNSLIFSGTRVDGVIGNAAITLGFAS 60

Query: 61 LAAQAAASLAFITVLIGIFH---HLT 83
          LAA AAASLAFITVLIGI +   HLT
Sbjct: 61 LAAHAAASLAFITVLIGIKNTPFHLT 86


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.129    0.352 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24599798
Number of Sequences: 2977
Number of extensions: 691310
Number of successful extensions: 2521
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2520
Number of HSP's gapped (non-prelim): 1
length of query: 83
length of database: 189,106,746
effective HSP length: 57
effective length of query: 26
effective length of database: 154,992,987
effective search space: 4029817662
effective search space used: 4029817662
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)