BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6784 1495788 1496054 89 !not a gene!
         (89 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71163 hypothetical protein PH0506 - Pyrococcus horikoshii ...   136  5e-32

>pir||E71163 hypothetical protein PH0506 - Pyrococcus horikoshii
           >gi|3256911|dbj|BAA29594.1| (AP000002) 123aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 123
           
 Score =  136 bits (339), Expect = 5e-32
 Identities = 68/89 (76%), Positives = 72/89 (80%)

Query: 1   MILLVGFKAFIAYCGIIESSEYWIFLNSSLGKDIKSLPLKIAEPPLYSIGGFLRIKEWTR 60
           +I LVGF AFIAYCGII++S YWIFL SSL   IKS PLKIA PPL  IGGFLRI+EWTR
Sbjct: 29  LIFLVGFNAFIAYCGIIDNSLYWIFLASSLESFIKSFPLKIAFPPLCVIGGFLRIREWTR 88

Query: 61  VDLPQPLSPATPKTSPSPTSKLTPSTALT 89
           VD PQPLSPA P TSP  TSKLTPSTA T
Sbjct: 89  VDFPQPLSPAIPNTSPFLTSKLTPSTAFT 117


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.415 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37060670
Number of Sequences: 2977
Number of extensions: 1550624
Number of successful extensions: 12942
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12941
Number of HSP's gapped (non-prelim): 1
length of query: 89
length of database: 189,106,746
effective HSP length: 49
effective length of query: 40
effective length of database: 159,780,883
effective search space: 6391235320
effective search space used: 6391235320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)