BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6896 1529331 1529537 69 !not a gene!
         (69 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O58558|Y828_PYRHO HYPOTHETICAL PROTEIN PH0828 >gi|7518844|pir...    87  3e-17

>sp|O58558|Y828_PYRHO HYPOTHETICAL PROTEIN PH0828 >gi|7518844|pir||G71132 hypothetical
           protein PH0828 - Pyrococcus horikoshii
           >gi|3257238|dbj|BAA29921.1| (AP000003) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score = 86.6 bits (211), Expect = 3e-17
 Identities = 36/63 (57%), Positives = 51/63 (80%)

Query: 3   KTGLKVEVYEVDEKTFKKINIMEVNAGYKPVEVDTKFGKTILWEWAYEPSGEKMESGDFD 62
           K  LKVEVYEVD++TF++IN +E+  GY+ VEV TKFGK  LWEW  +P G++++SGDFD
Sbjct: 54  KGKLKVEVYEVDKETFERINEIEIGTGYRLVEVSTKFGKAFLWEWGSKPRGKRIKSGDFD 113

Query: 63  DVK 65
           +++
Sbjct: 114 EIR 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.135    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27469390
Number of Sequences: 2977
Number of extensions: 973267
Number of successful extensions: 1477
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 189,106,746
effective HSP length: 48
effective length of query: 21
effective length of database: 160,379,370
effective search space: 3367966770
effective search space used: 3367966770
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 156 (65.2 bits)