BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs6938 1540931 1541224 98 !not a gene!
         (98 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71156 hypothetical protein PH0454 - Pyrococcus horikoshii ...   177  3e-44

>pir||G71156 hypothetical protein PH0454 - Pyrococcus horikoshii
          >gi|3256857|dbj|BAA29540.1| (AP000002) 135aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 135
          
 Score =  177 bits (444), Expect = 3e-44
 Identities = 89/97 (91%), Positives = 91/97 (93%)

Query: 1  MSYLLMSSPLYLFIIAETFSTASLAISPSFPVTIILPSSLLAAGATIASIGNTIPLCSPI 60
          MSYLL+SSPLYLFIIAET  TAS AISPSFPVTIILPSSLLAAGATIASIG TIPLCSPI
Sbjct: 1  MSYLLISSPLYLFIIAETLRTASFAISPSFPVTIILPSSLLAAGATIASIGKTIPLCSPI 60

Query: 61 IAKPLTLPISPPSVLITWYSFFLSMYQSASCFSSGLA 97
          IAKP TLPISPPS LITWYSFFLSMYQSASCFS+GLA
Sbjct: 61 IAKPFTLPISPPSTLITWYSFFLSMYQSASCFSNGLA 97


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.135    0.395 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33562816
Number of Sequences: 2977
Number of extensions: 1209890
Number of successful extensions: 5399
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5398
Number of HSP's gapped (non-prelim): 1
length of query: 98
length of database: 189,106,746
effective HSP length: 52
effective length of query: 46
effective length of database: 157,985,422
effective search space: 7267329412
effective search space used: 7267329412
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 159 (66.3 bits)