BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs7354 1670867 1671025 53 !not a gene!
         (53 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O26368|R27A_METTH 30S RIBOSOMAL PROTEIN S27AE >gi|7439606|pir...    88  1e-17
emb|CAC12221.1| (AL445066) probable 30S ribosomal protein S27A [...    86  4e-17
gi|11498713 SSU ribosomal protein S27AE (rps27AE) [Archaeoglobus...    76  3e-14
sp|P54031|R27A_METJA 30S RIBOSOMAL PROTEIN S27AE >gi|2129267|pir...    75  8e-14

>sp|O26368|R27A_METTH 30S RIBOSOMAL PROTEIN S27AE >gi|7439606|pir||G69133 ribosomal
          protein S27a - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2621318|gb|AAB84774.1| (AE000812)
          ribosomal protein S27a [Methanobacterium
          thermoautotrophicum]
          Length = 51
          
 Score = 88.2 bits (215), Expect = 1e-17
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query: 5  QKWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKKK 53
          +K++LY VKDGK++RKN FC RC  GVFMADHGDR+ACG+CGYTEWK +
Sbjct: 2  KKFELYEVKDGKLVRKNPFCVRCSNGVFMADHGDRYACGKCGYTEWKNR 50


>emb|CAC12221.1| (AL445066) probable 30S ribosomal protein S27A [Thermoplasma
          acidophilum]
          Length = 55
          
 Score = 86.2 bits (210), Expect = 4e-17
 Identities = 33/48 (68%), Positives = 44/48 (90%)

Query: 5  QKWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKK 52
          QK +LY + DGK++RK++FCPRCGPGVF+A+H DR++CGRCGYTE+KK
Sbjct: 2  QKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKK 49


>gi|11498713 SSU ribosomal protein S27AE (rps27AE) [Archaeoglobus fulgidus]
          >gi|7388044|sp|O29152|R27A_ARCFU 30S RIBOSOMAL PROTEIN
          S27AE >gi|7439604|pir||H69388 SSU ribosomal protein
          S27AE (rps27AE) homolog - Archaeoglobus fulgidus
          >gi|2649484|gb|AAB90138.1| (AE001027) SSU ribosomal
          protein S27AE (rps27AE) [Archaeoglobus fulgidus]
          Length = 55
          
 Score = 76.5 bits (185), Expect = 3e-14
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 7  WKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKKK 53
          ++ Y +K  KV+RK KFCPRCG GVF+A+H DR +CG+CGYTE+KKK
Sbjct: 9  YRYYEIKGEKVVRKKKFCPRCGEGVFLAEHKDRLSCGKCGYTEFKKK 55


>sp|P54031|R27A_METJA 30S RIBOSOMAL PROTEIN S27AE >gi|2129267|pir||A64349 ribosomal
          protein S27A - Methanococcus jannaschii
          >gi|1591098|gb|AAB98383.1| (U67492) SSU ribosomal
          protein S27AE [Methanococcus jannaschii]
          Length = 60
          
 Score = 75.3 bits (182), Expect = 8e-14
 Identities = 30/47 (63%), Positives = 38/47 (80%)

Query: 6  KWKLYIVKDGKVIRKNKFCPRCGPGVFMADHGDRWACGRCGYTEWKK 52
          K+K Y ++  KVIR  K CPRCGPGVFMA+H +R+ACG+CGY EWK+
Sbjct: 9  KYKYYKIEGDKVIRLKKTCPRCGPGVFMAEHLNRYACGKCGYMEWKQ 55


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.145    0.543 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25593624
Number of Sequences: 2977
Number of extensions: 772147
Number of successful extensions: 2461
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2457
Number of HSP's gapped (non-prelim): 4
length of query: 53
length of database: 189,106,746
effective HSP length: 32
effective length of query: 21
effective length of database: 169,955,162
effective search space: 3569058402
effective search space used: 3569058402
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)