BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs7356 1671380 1671583 68 !not a gene!
         (68 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71205 hypothetical protein PH1911 - Pyrococcus horikoshii ...    99  4e-21

>pir||E71205 hypothetical protein PH1911 - Pyrococcus horikoshii
           >gi|3258353|dbj|BAA31036.1| (AP000007) 204aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 204
           
 Score = 99.5 bits (244), Expect = 4e-21
 Identities = 47/68 (69%), Positives = 58/68 (85%)

Query: 1   MIEKLNGDHSISSLIKTGNKATIIEKESEKHDVLVISRHYGTSSTKTHQVSPVVFRIMQN 60
           +IE LN +H ISS IK GNKATIIE ESE +D+L++SR+YG +  KT+QVSP+VFRI+QN
Sbjct: 137 LIEDLNLNHIISSQIKIGNKATIIEHESEDYDILIVSRYYGATMVKTYQVSPIVFRILQN 196

Query: 61  VEKPVIIY 68
           VEKPVIIY
Sbjct: 197 VEKPVIIY 204


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.130    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23088617
Number of Sequences: 2977
Number of extensions: 659233
Number of successful extensions: 1302
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 1
length of query: 68
length of database: 189,106,746
effective HSP length: 47
effective length of query: 21
effective length of database: 160,977,857
effective search space: 3380534997
effective search space used: 3380534997
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 156 (65.2 bits)