BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs7878 1693423 1693142 -94 !not a gene!
         (94 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B72477 hypothetical protein APE2459 - Aeropyrum pernix (str...    81  3e-15

>pir||B72477 hypothetical protein APE2459 - Aeropyrum pernix (strain K1)
           >gi|5106163|dbj|BAA81474.1| (AP000064) 117aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 117
           
 Score = 80.8 bits (196), Expect = 3e-15
 Identities = 48/94 (51%), Positives = 56/94 (59%)

Query: 1   MYLAFLSLLAGAPVFIWPAFSATAKSAIVASSVSPLLWETTTPYPALNAMYAASIASVNV 60
           +Y   LS  AGAPV I  A  ATA+SA+  SSVSPLLW T    P   A + AS ASV V
Sbjct: 9   LYFEVLSPRAGAPVLIIKASVATARSAMKVSSVSPLLWLTMWTIPLSLAAWMASRASVRV 68

Query: 61  PIWLTFKSRAFAAPISIPFFSLFGFVTKRSSPTI 94
           P W TF  R   A  +    +L+G VT+RSSPTI
Sbjct: 69  PTWFTFTRRPVTALRAEASLTLWGLVTRRSSPTI 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.132    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31519725
Number of Sequences: 2977
Number of extensions: 1011101
Number of successful extensions: 3664
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3663
Number of HSP's gapped (non-prelim): 1
length of query: 94
length of database: 189,106,746
effective HSP length: 50
effective length of query: 44
effective length of database: 159,182,396
effective search space: 7004025424
effective search space used: 7004025424
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 158 (66.0 bits)