BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs7927 1680644 1680369 -92 !not a gene!
         (92 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71207 hypothetical protein PH1924 - Pyrococcus horikoshii ...   143  3e-34

>pir||D71207 hypothetical protein PH1924 - Pyrococcus horikoshii
           >gi|3258368|dbj|BAA31051.1| (AP000007) 124aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 124
           
 Score =  143 bits (358), Expect = 3e-34
 Identities = 70/91 (76%), Positives = 77/91 (83%)

Query: 1   MAFAVPSSSTWETYVMGFPWNSSPRVSIIFSFMYFTIIMNSSTNGSRFSSMYSIMGLLAT 60
           +A AVPSSS W TYV+GFPWNSSPRVSIIFSF+Y T I+NSSTNGSRFSSMYSI+GL A 
Sbjct: 33  IALAVPSSSPWTTYVIGFPWNSSPRVSIIFSFLYLTTIINSSTNGSRFSSMYSIIGLFAI 92

Query: 61  FKIGFGLSSVSGLNLSPFPAARTTAFILSHP 91
           FKIG GLSSV GL+LSPFPAA  TAF+   P
Sbjct: 93  FKIGLGLSSVKGLSLSPFPAASITAFMTLPP 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.132    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32753593
Number of Sequences: 2977
Number of extensions: 1055518
Number of successful extensions: 3280
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3279
Number of HSP's gapped (non-prelim): 1
length of query: 92
length of database: 189,106,746
effective HSP length: 51
effective length of query: 41
effective length of database: 158,583,909
effective search space: 6501940269
effective search space used: 6501940269
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 158 (66.0 bits)