BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8013 1660086 1659826 -87 !not a gene!
         (87 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71454 hypothetical protein PH0291 - Pyrococcus horikoshii ...   119  4e-27

>pir||D71454 hypothetical protein PH0291 - Pyrococcus horikoshii
           >gi|3256680|dbj|BAA29363.1| (AP000001) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score =  119 bits (296), Expect = 4e-27
 Identities = 64/87 (73%), Positives = 68/87 (77%)

Query: 1   MNNSSASGKTSSGFPFISIRLRTFSMPFSSRPNSPSALRNSSWDSLSFLSIILINPMSSL 60
           +NNSSA GKT SG PFIS    TFS+  S +PNS S L NSSWDSLS LSIILINPMSS 
Sbjct: 30  LNNSSAKGKTLSGLPFISTSSSTFSISLSPKPNSLSKLMNSSWDSLSLLSIILINPMSSD 89

Query: 61  TPSIFANSSRRTLSPILTVKSFSPVER 87
           TPSI ANSSRR LSP+LTVKS  PVER
Sbjct: 90  TPSIPANSSRRILSPMLTVKSLRPVER 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.126    0.350 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30084320
Number of Sequences: 2977
Number of extensions: 971975
Number of successful extensions: 2591
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2590
Number of HSP's gapped (non-prelim): 1
length of query: 87
length of database: 189,106,746
effective HSP length: 57
effective length of query: 30
effective length of database: 154,992,987
effective search space: 4649789610
effective search space used: 4649789610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 157 (65.6 bits)