BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8144 1611441 1611280 -54 !not a gene!
         (54 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71138 phosphoribosylglycinamide formyltransferase 2 (EC 2....    66  7e-11
pir||C75013 phosphoribosylglycinamide formyltransferase 2 (EC 2....    66  7e-11

>pir||C71138 phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) PH0318
           [similarity] - Pyrococcus horikoshii
           >gi|3256709|dbj|BAA29392.1| (AP000002) 433aa long
           hypothetical phosphoribosylglycinamide formyl
           transferase [Pyrococcus horikoshii]
           Length = 433
           
 Score = 65.6 bits (157), Expect = 7e-11
 Identities = 34/54 (62%), Positives = 41/54 (74%)

Query: 1   MDRYANALAMLVSHYFYVGDMRKADFIFLVVERGKPDARILEIEAISLNTPFEF 54
           +DRYANA AM V+H  YVG+M   DF++ VVER KPDA I EIEAI+L+  FEF
Sbjct: 48  VDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLDALFEF 101


>pir||C75013 phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
          PAB1268 [similarity] - Pyrococcus abyssi (strain Orsay)
          >gi|5459059|emb|CAB50545.1| (AJ248288)
          PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 (EC
          2.1.2.-) (GART 2) (GAR TRANSFORMYLASE 2)
          (5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE 2)
          (FORMATE-DEPENDENT GAR TRANSFORMYLASE). [Pyrococcus
          abyssi]
          Length = 429
          
 Score = 65.6 bits (157), Expect = 7e-11
 Identities = 34/54 (62%), Positives = 41/54 (74%)

Query: 1  MDRYANALAMLVSHYFYVGDMRKADFIFLVVERGKPDARILEIEAISLNTPFEF 54
          +DRYANA AM V+H  YVG+M   DF++ VVER KPDA I EIEAI+L+  FEF
Sbjct: 45 VDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINLDALFEF 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.145    0.417 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17830142
Number of Sequences: 2977
Number of extensions: 445589
Number of successful extensions: 914
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 2
length of query: 54
length of database: 189,106,746
effective HSP length: 33
effective length of query: 21
effective length of database: 169,356,675
effective search space: 3556490175
effective search space used: 3556490175
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 156 (65.2 bits)