BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8272 1571337 1571209 -43 !not a gene!
         (43 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71144 hypothetical protein PH0364 - Pyrococcus horikoshii ...    68  2e-11

>pir||A71144 hypothetical protein PH0364 - Pyrococcus horikoshii
           >gi|3256755|dbj|BAA29438.1| (AP000002) 173aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 173
           
 Score = 67.5 bits (162), Expect = 2e-11
 Identities = 34/41 (82%), Positives = 37/41 (89%)

Query: 2   ATSCAAFIMLSISSSIGTTKQAESIPSGLPEFMSAGVLGMK 42
           ATS AAFIMLS+SSSIGTTKQAESIP GLPE ++AGV GMK
Sbjct: 90  ATSWAAFIMLSMSSSIGTTKQAESIPRGLPELINAGVFGMK 130


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.315    0.124    0.332 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12311999
Number of Sequences: 2977
Number of extensions: 231277
Number of successful extensions: 563
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 1
length of query: 43
length of database: 189,106,746
effective HSP length: 22
effective length of query: 21
effective length of database: 175,940,032
effective search space: 3694740672
effective search space used: 3694740672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)