BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8580 1478698 1478501 -66 !not a gene!
         (66 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71166 hypothetical protein PH0529 - Pyrococcus horikoshii ...    81  2e-15

>pir||E71166 hypothetical protein PH0529 - Pyrococcus horikoshii
           >gi|3256935|dbj|BAA29618.1| (AP000002) 174aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 174
           
 Score = 80.8 bits (196), Expect = 2e-15
 Identities = 41/60 (68%), Positives = 45/60 (74%)

Query: 5   SPHSXXXXXXXXXXXGWVRTLLFVLTITQTGTRLFCFMAFASLSFFAKGLFLAIFIPSQE 64
           SPHS           G V+TLLFVLTITQTGT LFCFMA ASLSFFA+GLFLAI +PSQ+
Sbjct: 115 SPHSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASLSFFARGLFLAISLPSQD 174


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.333    0.139    0.426 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15708719
Number of Sequences: 2977
Number of extensions: 328623
Number of successful extensions: 1126
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 1
length of query: 66
length of database: 189,106,746
effective HSP length: 45
effective length of query: 21
effective length of database: 162,174,831
effective search space: 3405671451
effective search space used: 3405671451
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 156 (65.2 bits)