BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8831 1396110 1395835 -92 !not a gene!
         (92 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71104 hypothetical protein PH0607 - Pyrococcus horikoshii ...   132  7e-31

>pir||F71104 hypothetical protein PH0607 - Pyrococcus horikoshii
           >gi|3257013|dbj|BAA29696.1| (AP000003) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score =  132 bits (330), Expect = 7e-31
 Identities = 66/91 (72%), Positives = 72/91 (78%)

Query: 2   GVTTSLSPLLTLRMCLAIXXXXXXXXXXTRTKMRSNLLIKVGGKFICSDILFILLNLPCF 61
           GVTTSLSPLLT  +CLAI           RTK++SNLL  VGG+ ICSD LFILLNLPCF
Sbjct: 12  GVTTSLSPLLTFNICLAISLSTFSSGSSMRTKIKSNLLSNVGGRSICSDTLFILLNLPCF 71

Query: 62  GFAAAMTVVLAFRVAVIPAFDRLIVCCSNAS 92
           GFAAA+TVVLAF VAV+PAFDRLIVCCS AS
Sbjct: 72  GFAAAITVVLAFSVAVMPAFDRLIVCCSRAS 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.336    0.144    0.436 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24509388
Number of Sequences: 2977
Number of extensions: 679557
Number of successful extensions: 1554
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1553
Number of HSP's gapped (non-prelim): 1
length of query: 92
length of database: 189,106,746
effective HSP length: 47
effective length of query: 45
effective length of database: 160,977,857
effective search space: 7244003565
effective search space used: 7244003565
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.7 bits)
S2: 159 (66.3 bits)