BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs8931 1366590 1366327 -88 !not a gene!
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71172 hypothetical protein PH0573 - Pyrococcus horikoshii ...   107  3e-23

>pir||A71172 hypothetical protein PH0573 - Pyrococcus horikoshii
          >gi|3256979|dbj|BAA29662.1| (AP000002) 141aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 141
          
 Score =  107 bits (264), Expect = 3e-23
 Identities = 59/88 (67%), Positives = 59/88 (67%)

Query: 1  MLGFIPVAKITRSALYSPASVTTFSTLSFPSILRTISWSLRXXXXXXXXXXXXXXXXXKD 60
          M GFIPVAKIT SALYSPASVTTFSTLS PSI   IS SLR                 KD
Sbjct: 1  MFGFIPVAKITSSALYSPASVTTFSTLSSPSIFIVISCSLRFTCFFSFSSKISVTSLSKD 60

Query: 61 LLRILSPLTIIVTLFPWATKASAISNPM 88
          LLR LSPLTIIVT FPWA  ASAIS PM
Sbjct: 61 LLRTLSPLTIIVTFFPWAANASAISIPM 88


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.134    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21948931
Number of Sequences: 2977
Number of extensions: 470347
Number of successful extensions: 1332
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1330
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 189,106,746
effective HSP length: 52
effective length of query: 36
effective length of database: 157,985,422
effective search space: 5687475192
effective search space used: 5687475192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 158 (66.0 bits)