BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9095 1315712 1315503 -70 !not a gene!
         (70 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71245 hypothetical protein PH0219 - Pyrococcus horikoshii ...    69  1e-11

>pir||A71245 hypothetical protein PH0219 - Pyrococcus horikoshii
           >gi|3256605|dbj|BAA29288.1| (AP000001) 125aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 125
           
 Score = 68.7 bits (165), Expect = 1e-11
 Identities = 27/33 (81%), Positives = 29/33 (87%)

Query: 29  GPAQNLWWTGRDLNPGPPPCQGGAHTRLSYRPT 61
           G   + WWTGRDLNPGPPPC+GGAHTRLSYRPT
Sbjct: 84  GTCISSWWTGRDLNPGPPPCKGGAHTRLSYRPT 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.141    0.513 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41028063
Number of Sequences: 2977
Number of extensions: 1973683
Number of successful extensions: 3192
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3190
Number of HSP's gapped (non-prelim): 2
length of query: 70
length of database: 189,106,746
effective HSP length: 39
effective length of query: 31
effective length of database: 165,765,753
effective search space: 5138738343
effective search space used: 5138738343
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 157 (65.6 bits)