BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9240 1278575 1278390 -62 !not a gene!
         (62 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71119 hypothetical protein PH0727 - Pyrococcus horikoshii ...    93  4e-19

>pir||H71119 hypothetical protein PH0727 - Pyrococcus horikoshii
          >gi|3257135|dbj|BAA29818.1| (AP000003) 278aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 278
          
 Score = 92.8 bits (227), Expect = 4e-19
 Identities = 46/60 (76%), Positives = 49/60 (81%), Gaps = 4/60 (6%)

Query: 3  MTSVLIVGVLPYDSGKTTLAIKLVREAIEEGFDVGVSKPVGGFNGWY----LRVSIELNL 58
          M SVLIVG LPYDSGKTT A+ L+REAIEEGFDVGVSKPVGGFNGWY    L+ SIE  L
Sbjct: 1  MVSVLIVGALPYDSGKTTFALNLIREAIEEGFDVGVSKPVGGFNGWYQYEFLKKSIEFGL 60


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.139    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21152932
Number of Sequences: 2977
Number of extensions: 641640
Number of successful extensions: 1955
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1954
Number of HSP's gapped (non-prelim): 1
length of query: 62
length of database: 189,106,746
effective HSP length: 41
effective length of query: 21
effective length of database: 164,568,779
effective search space: 3455944359
effective search space used: 3455944359
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)