BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9319 1254840 1254658 -61 !not a gene!
         (61 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71124 hypothetical protein PH0767 - Pyrococcus horikoshii ...    92  7e-19

>pir||H71124 hypothetical protein PH0767 - Pyrococcus horikoshii
           >gi|3257175|dbj|BAA29858.1| (AP000003) 272aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 272
           
 Score = 92.1 bits (225), Expect = 7e-19
 Identities = 43/61 (70%), Positives = 46/61 (74%)

Query: 1   MKVAFKSAWVFIIPTQLGPIILIPYLWAISTNXXXXXXXXXXXXXNPAVIITTPLTPFSP 60
           +KVAFKS WVFIIPTQ GP+ILIPYLWAIST+             NPAVIITTPLTPFSP
Sbjct: 179 IKVAFKSTWVFIIPTQFGPMILIPYLWAISTSSFSSLFPSSPVSPNPAVIITTPLTPFSP 238

Query: 61  H 61
           H
Sbjct: 239 H 239


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.141    0.468 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19263321
Number of Sequences: 2977
Number of extensions: 416835
Number of successful extensions: 525
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 189,106,746
effective HSP length: 40
effective length of query: 21
effective length of database: 165,167,266
effective search space: 3468512586
effective search space used: 3468512586
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)