BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9413 1225295 1225050 -82 !not a gene!
         (82 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71129 hypothetical protein PH0801 - Pyrococcus horikoshii ...   102  9e-22

>pir||D71129 hypothetical protein PH0801 - Pyrococcus horikoshii
           >gi|3257211|dbj|BAA29894.1| (AP000003) 109aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 109
           
 Score =  102 bits (251), Expect = 9e-22
 Identities = 52/82 (63%), Positives = 54/82 (65%)

Query: 1   MLGCPKKLAMVLALFGLSTIISADLTRSLTCSLILPXXXXXXXXXXXXXXXXXXXXXXXX 60
           +LGCPKKLA+VLAL GLSTII ADLTRS TCSLI P                        
Sbjct: 28  LLGCPKKLAIVLALLGLSTIIRADLTRSFTCSLIFPSITSLTFSLSLSISLRTSLRFTSS 87

Query: 61  NFLISNSTKRQRICLIKPLKTF 82
           NFLISNSTKRQRICLIKPLKTF
Sbjct: 88  NFLISNSTKRQRICLIKPLKTF 109


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.141    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16457386
Number of Sequences: 2977
Number of extensions: 244329
Number of successful extensions: 439
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 1
length of query: 82
length of database: 189,106,746
effective HSP length: 49
effective length of query: 33
effective length of database: 159,780,883
effective search space: 5272769139
effective search space used: 5272769139
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 157 (65.6 bits)