BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9663 1157195 1156926 -90 !not a gene!
         (90 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|11500021 hypothetical conserved protein [Archaeoglobus fulgidus]    71  2e-12
pir||B72497 hypothetical protein APE2616 - Aeropyrum pernix (str...    67  4e-11

>gi|11500021 hypothetical conserved protein [Archaeoglobus fulgidus]
           Length = 144
           
 Score = 71.0 bits (171), Expect = 2e-12
 Identities = 32/74 (43%), Positives = 49/74 (65%)

Query: 3   KDRAFIIAEEVFNSVNFIEDYEIYELAFLIAFETGCRAIDSFYIATAKVRDAILVSNDRA 62
           K  A  + E +   V  I+   + E+AF +  ETGCRAID+++IATAK+ ++ L++NDR 
Sbjct: 58  KSEAITLYEGIVXKVKLIDFAVLNEVAFSVCLETGCRAIDAYFIATAKLANSTLITNDRI 117

Query: 63  QVESARKFGVNAFY 76
             E+ARK G+ A+Y
Sbjct: 118 MAENARKAGIEAYY 131


>pir||B72497 hypothetical protein APE2616 - Aeropyrum pernix (strain K1)
           >gi|5106323|dbj|BAA81634.1| (AP000064) 141aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 141
           
 Score = 67.1 bits (161), Expect = 4e-11
 Identities = 30/73 (41%), Positives = 49/73 (67%)

Query: 4   DRAFIIAEEVFNSVNFIEDYEIYELAFLIAFETGCRAIDSFYIATAKVRDAILVSNDRAQ 63
           ++A  I +     VN + + E+++ A  IA  TGCRA+D+++IATAK  D IL++ND+  
Sbjct: 59  EQALRIVDTTLKHVNVVREEELHDKAAEIALITGCRAVDAYFIATAKHVDGILITNDKVM 118

Query: 64  VESARKFGVNAFY 76
            ++A+K GV A+Y
Sbjct: 119 KDNAQKIGVKAYY 131


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.139    0.387 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21600180
Number of Sequences: 2977
Number of extensions: 578130
Number of successful extensions: 1409
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 2
length of query: 90
length of database: 189,106,746
effective HSP length: 53
effective length of query: 37
effective length of database: 157,386,935
effective search space: 5823316595
effective search space used: 5823316595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 158 (66.0 bits)