BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs9883 1097433 1097230 -68 !not a gene!
         (68 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71071 hypothetical protein PH1261 - Pyrococcus horikoshii ...    95  1e-19

>pir||A71071 hypothetical protein PH1261 - Pyrococcus horikoshii
           >gi|3257680|dbj|BAA30363.1| (AP000005) 103aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 103
           
 Score = 94.8 bits (232), Expect = 1e-19
 Identities = 45/61 (73%), Positives = 54/61 (87%)

Query: 8   PTIELIIDRTRKAYLQLRVKATGTTMRGVMPEPIAGPTMKNPRAEPFLSLKSSLIKAVAG 67
           PTIELII+RTRK  LQL ++ATGTT++GV+PEPIAGP +K P+AEPF SLKSSLI+ VAG
Sbjct: 43  PTIELIIERTRKESLQLSIRATGTTIKGVIPEPIAGPIIKKPKAEPFFSLKSSLIREVAG 102

Query: 68  A 68
           A
Sbjct: 103 A 103


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.133    0.364 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21591792
Number of Sequences: 2977
Number of extensions: 610944
Number of successful extensions: 1361
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1360
Number of HSP's gapped (non-prelim): 1
length of query: 68
length of database: 189,106,746
effective HSP length: 47
effective length of query: 21
effective length of database: 160,977,857
effective search space: 3380534997
effective search space used: 3380534997
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 156 (65.2 bits)