Similarity searches are performed with RPS-BLAST (BLAST 2.2.x NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402) Submit your sequence and select the CDD DataBase you want to match.
>r_klactVI4045 gi|3915185|sp|O60014|UBR1_KLULA N-END-RECOGNIZING PROTEIN (UBIQUITIN-PROTEIN LIGASE E3 COMPONENT) (N-RECOGNIN) MINDTDPESFLRQHVGRTLGCIHSRPEFKDIKGSAERAVMDKELKSFIYGYYYYMISDSGRLLPHMFTATNEREFPKNVD QAMEIKLSSKPWYKIDENGGHSKFNHAGRICGAKFRVGEPIYRCKECSFDDTCVLCVNCFNPKDHVGHHVYTSICTEFNN GICDCGDKEAWNHELNCKGAEDNGRLEDEFDDHDGKISKMLESVLIELFDHFIDVFNQNIEPLTTIQKPLIAKLRYFIQN GKYNEQADMLRRLAYRNQYMDEEESQQQTPSTSLDPLSTLKDYAILVYNDEFHNYSQASAAIRQGGPDNKHIDLLTAKID SEGRSLLRCSADIASLMGGFFSVQSNGLSCTITQWYEYLHQEACKYSIMWINDCLNIPNSTFQSLFRNAIGKVLCSKYEP FYQSIDMTSVVRDYFSDSYLSDDPYLYADHSVLGEGVKIPLGRHKSLDPGDISAISPILNKVIAEDHHEYTNSRLQYVLF LENRYWKKLRKIVQDLIIPTLASSAVHKPMFTDQLVEIFPHMTRSVTFMDREPQLTSLRESVVQLFTCPTTAYSIFHSGH FNYVIWSVIDVFVDFSTMDEGTLVWQRVQRSNPSKSYSISFKQGLYAVETLLSKITDPNLLLKPGEFIMIVTLCKLFNGA WKIKRKEGEHVLREDQHFIPYLEYTTSVYSIIQTFDKVLQQSKDHIDQRLLIGAINLLDSFLGHRNLSYKLYKDFEIIKF QISKERVSFMNPVHTLFSFLVQHVPLQVSIQVLSQSKDYLVISDFALRSVVLCSQIDIGFWVRNGMSVLHQSAYYKNNPE MSSYSRDIQLNQLAFLIEKNDFQRVIYNMLDRWELLDWFDGSVPSTETVYDDKISSIIQQFVAFLYQILVERDFYKKFDT LEETQLYNIKNAIIYKLYAEPLSYTDLLNDIPDYLTESVSQFDTVLEEVSTYIEPKGLEDNGVFKLKKELYKRIDSLRLL NMGNDFEHSATIVKSHLADSKEKRAKIIVKPQLLELDELDPCARELGSFTRTNLFAKLIFKLLKLAVSDSSFSFTYELLH LIHAIFRDDEMVNGKDSLPEAYISKPICDLLLSIVDSESGSFSENVVATADYLLDNMIMKRPTAVLESLTECFGTKYIAD YKIRKANQGVNFEETEQERKRRLAKNRQQQIMNRFSRQQKKFMDKHEEYSAGNDEDVDMDGEDLAGELNEFHCSLCHDDV SDDFFVIPIYQNYSPVFLSSNPTPMEIYKPWHGFDNNEHLATYNTDLFYKKKENGASQLMHESTQKVLVSCNHAVHYRCF KHYIDKKRYSTDLFICPLCQTYCNSVIPVDTVKLQSGDRLLQQKLTGGLDESLLLTFSEYSSECNDEVGKIILSLKDSNN GLRLNRNDPTWIQDRFLTLSLQFSNNICMLEMLSRLNKDPFGTLLSGEEQKFKTLQNILKSLAVYTRLTKHTEENVLKFY EDIRSSNLPSYPFFRVVETVLRSRLSFKDCLQEVLVERLKGLTKDFGSFYRKYESELRAQTCLDSSEFSIVLKTTILGAG FGDQVEKHTLDLFYTFLISELLPTLRRSIILLKALKQFMTGGDDLDFNEKDVLSGSLTSESKEKHFHLLIRFLLQTDFYD LLMNSHSPLSPESSLVNAPHEYCSIIKLTDLATHLNTYVTNNKNITLREENDQKIRNTVNRLDYKICLICGVKIHARTDG LEMQKHMERCSHGSSGLFLIPNISQVCLYLSRPDCTVNISAPYLNSHGESGRNAIERGDLTVLNHARYEHLTRLWISNGI PGYISRVMGDEFRVAMANNRTFTRNMFWRPGAAFNAGGESSDEDLMNDDEFGNDDRPDLRFRQPDVELRINGGPFGGDIP IRLPTERGDIHDFFEFVQNMRGGMQGDGADIPTTEDIIEQLQGNAMNGFFGRADRNREHFELNDQSDGNEDGEDEEHENN ASEDQDTEYSSAEEGFDFNELNNVE
Display full alignements in /Graphics Before submission you must select at least one Conserved Domain DataBase . Pairwise Master-slave with identities Master-slave no identities Flat master-slave Flat master-slave, no identities Master-slave no identities & blunt ends Flat master-slave, no identities & blunt ends Output Alignment: (options not available with blastx and tblastx)
Expect value (E)
[Real]
Query sequence type
Protein Nucleic
Filter query sequence (DUST with blastn, SEG with others)
True False
X dropoff value for gapped alignment (in bits)
[Integer]
Number of one-line descriptions (V)
Number of alignments to show (B)
DataBase administrator