Evoldeep Annotation database mining

Back to evoldeep Home Page - Enter your search criteria in the various supplied fields (multiple choices are allowed). - Boolean queries are possible with the following operators : 'or', 'and', ' not'. Separate these keywords with spaces. - Regular expressions (POSIX 1003.2) are possible with the following operators: ' .' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".   Display Item info for : Fosmid ID: contains starts with is (eg:"AD1000-1-A01") Gene ID: contains starts with is (eg: "AD1000-1-A01_1") Description: contains starts with is (type a gene description eg : "polymerase") Comment: Gene Name: contains starts with is (type a gene name eg : "his") EC number: contains starts with is (type an EC number eg : "6.1.1.2") Gene Coding probability: Any Coding Coding but overlap problem Coding and no overlap problem Not coding COG KOG Category:  Any --INFORMATION STORAGE AND PROCESSING J Translation, ribosomal structure and biogenesis A RNA processing and modification K Transcription L Replication, recombination and repair B Chromatin structure and dynamics --CELLULAR PROCESSES AND SIGNALING D Cell cycle control etc... Y Nuclear structure V Defense mechanisms T Signal transduction mechanisms M Cell wall/membrane/envelope biogenesis N Cell motility Z Cytoskeleton W Extracellular structures U Intracellular trafficking etc.. O Posttranslational modification etc.. --METABOLISM C Energy production and conversion G Carbohydrate transport and metabolism E Amino acid transport and metabolism F Nucleotide transport and metabolism H Coenzyme transport and metabolism I Lipid transport and metabolism P Inorganic ion transport and metabolism Q Secondary metabolites biosynthesis etc... --POORLY CHARACTERIZED R General function prediction only S Function unknown COG number:               -- or : contains starts with is Location is Between and on chromosome coordinates Annotation method is: Any AUTO ANNOTATION MANUAL ANNOTATION (or author :) Item Type: Any Protein RNA tRNA Promoter Feature Intron Status: Any ADDED DELETED Order by: Name Date Location Strand COG category COG number Author Phylo domain pattern Gene Size Gene Size: Between and   Strand: Any Direct Reverse Clone Library: All SAT1000 AD1000 KM3 other Display last annotation only : Output Options: Return no more than: 10 25 50 75 100 200 500 Unlimited answers Output format: HTML (Default) Plain text Plain text-Table XML Vertical (row) Choose items to display : Fosmid Item/Orf ID Start coordinates End coordinates Description Start codon Strand Annotation Status Gene Name E.C. Number Gene Product Comment Item type COG category COG number Coding probability Phylogenetic domain pattern author Time Size ------------------------------------------------ Display also: Element sequence Element sequence (fasta) Questions, comments & bug reports to : yvan.zivanovic@u-psud.fr