Evoldeep Fosmid End database

Back to evoldeep Home Page - Enter your search criteria in the various supplied fields (multiple choices are allowed). - Boolean queries are possible with the following operators : 'or', 'and', ' not'. Separate these keywords with spaces. - Regular expressions (POSIX 1003.2) are possible with the following operators: ' .' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".   Display Item info for : Choose clone_ends database : Select all    clear all Fosmid Ends matches in RefSeq Clone_end ID: contains starts with is (eg:"AD1000-1-A01f") Discard multiple clone hits: (some clones have multiple hits, should we take them into account? ) Clone ID: contains starts with is (eg: "AD1000-1-A01") Lineage: contains starts with is (eg: "Bacteria") Bit Score: is >= any is <= (eg: "50") P value: is >= any is <= (eg: "1e-10") % identity: is >= any is <= (eg: "40") Clone Library: All SAT1000 AD1000 KM3 Matched ends properties: Anything Both ends exist and have matched something Both ends exist and have matched the same species Both ends exist and have matched same phylo domain Both ends exist and have matched different phylo domain Both ends exist and have matched different species Only one end has matched End matched species End matched domain End matched lineage Contains: (phylogeny lineage of matched genes in RefSeq ) (use only best hits when using clone ends) Order by: Clone_end ID Subject Lineage P value Bit Score % alignment Clone Library Output Options: Return no more than: 10 25 50 75 100 200 500 Unlimited answers Output format: HTML (Default) Plain text Plain text-Table XML Vertical (row) Choose items to display : Clone end ID Matched gene (subject) % Identity Bit Score P value TaxID Matched Species Matched full lineage Matched phylo domain Library Clone Name _________________________________________________________ Clone end ID in group Matched gene (subject) in group % Identity in group Bit Score in group P value in group TaxID in group Matched Species in group Matched full lineage in group Matched phylo domains in group Library in group Clone Name in group _________________________________________________________ Display also: Clone ends sequence Clone ends fasta sequence Questions, comments & bug reports to : yvan.zivanovic@u-psud.fr