Evoldeep Genes & Fosmids clustering analysis
[ experimental ]

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In this page, self-match results from several EVOLDEEP libraries (KM3/AD1000/SAT1000 genes with blastp and KM3/AD1000/SAT1000 fosmids with blastn ) are displayed in a non-conventional way.
Clusters of uniquely connected elements (of genes, fosmids or fosmids as pool of genes) are built upon their mutual HSP scores and P values. Three different vizualization approaches are possible :
Force Directed (1), Radial Graph (2) and Hypertree (3)

  • Choose a data set (currently genes::blastp & fosmids::blastn)
  • Select a group to explore and a visualization layout (force directed, Radial graph, Hypertree).
  • Click on node's name to bring a node in focus (not available with force directed graphs)
  • Mouse over a node's name displays its matches (right column) and highlight nodes' connection on the graph.
  • Use mouse wheel to zoom-in/zoom-out
  • Click+drag to move all canvas
  • Click on a node to drag
CURRENTLY AVAILABLE DATASETS : << currently selected



(1) Force-Directed Drawing Algorithms (Stephen G. Kobourov) http://www.cs.brown.edu/~rt/gdhandbook/chapters/force-directed.pdf
(2)Animated Exploration of Dynamic Graphs with Radial Layout (Ka-Ping Yee, Danyel Fisher, Rachna Dhamija, Marti Hearst) http://bailando.sims.berkeley.edu/papers/infovis01.htm
(3)A Focus+Context Technique Based on Hyperbolic Geometry for Visualizing Large Hierarchies (John Lamping, Ramana Rao, and Peter Pirolli). http://www.ramanarao.com/papers/startree-chi95.pdf