Deinococcus radiodurans R1 [deep sequencing]

Deinococcus radiodurans R1 (Hua) CP015081/ Dra_DS

hosted by: UMR C8621 Centre Universitaire d'Orsay Batiment 400,
Orsay France

Hua et al. sequence:


LOCUS       CP015081             2646742 bp    DNA     circular BCT 06-MAY-2016 
VERSION     CP015081.1  GI:1026245073
DBLINK      BioProject: PRJNA315481
            BioSample: SAMN04562548
  AUTHORS   Hua,X. and Hua,Y.
  TITLE     compelete genome sequence of the Extremely Radiation-Resistant
            Bacteria Deinococcus radiodurans R1
  JOURNAL   Unpublished

  JOURNAL   Submitted (17-MAR-2016) Institue of Nuclear-Agricultural Science,
            Zhejiang University, Hangzhou, Zhejiang 310058, China
COMMENT     Source DNA is available from Yuejin Hua, Zhejiang University.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            ##Genome-Assembly-Data-START##
            Assembly Method       :: SMRT Analysis v. 2.3.0
            Genome Coverage       :: 176.54x
            Sequencing Technology :: PacBio
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 04/05/2016 13:23:57
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 3.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,212
            CDS (total)                       :: 3,150
            Genes (coding)                    :: 3,079
            CDS (coding)                      :: 3,079
            Genes (RNA)                       :: 62
            rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)
            tRNAs                             :: 50
            ncRNAs                            :: 3
 


Some comparison elements:

Genes Scatter Plots Chromosome 1
Chromosome1
Chromosome 2
Chromosome1
Plasmid MP1
Chromosome1
Definitions comparison Definition for Chromosomes 1,2 & plasmid MP1 genes
Nucleic sequence comparison DRA_WGS_DS x Dra R1 CP015081 blastn cross match