BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC25ZF08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1551 1628 0.0
>3x_Contig1551
Length = 9073
Score = 1628 bits (821), Expect = 0.0
Identities = 881/897 (98%), Gaps = 3/897 (0%)
Strand = Plus / Plus
Query: 44 gcttactatcaatccatacaatgcattgtattctccccgtggtattatagataaatacat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 gcttactatcaatccatacaatgcattgtattctccccgtggtattatagataaatacat 3133
Query: 104 attacttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 attacttgctttgtcaatattcaatccccttcaatgtagactcataagaattgttgtaat 3193
Query: 164 gctataattattgggaattattaagcgacaaagtaaattatcttagaggattgcatatta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3194 gctataattattgggaattattaagcgacaaagtaaattatcttagaggattgcagatta 3253
Query: 224 ataagttttattataatttcacagcaaggaattgtttcagcactttagtccattaagcta 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3254 ataagttttattataatttcacagcaaggaattgtttcagcactttagtccattaagcta 3313
Query: 284 gataactactatatataattttggaagagaataggaatcgaacttatgaagaacacagcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3314 gataactactatatataattttggaagagaataggaatcgaacttatgaagaacacagcc 3373
Query: 344 attgagtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacaagta 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3374 attgagtttacagcaagtgattgtgaaagtagcttggtatattcggtatattaacaagta 3433
Query: 404 acaaaaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3434 acaaaaaaaaaaacacacaatgaactagaatgtagctgattagcatgatactgtactttc 3493
Query: 464 tgtgatactaaatcaaatattactaatatcttgaatgtatatcattgaattacagcttat 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3494 tgtgatactaaatcaaatattactaatatcttgaatgtatatcattgaattacagcttat 3553
Query: 524 tgccgaaagggattgaatctgtataaaaaggctgaaaaaacatacctcgaaaaaaaaata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3554 tgccgaaagggattgaatctgtataaaaaggctgaaaaaacatacctcgaaaaaaaaata 3613
Query: 584 gcacggctgataatataaaccgtaaatatactattgaagggcaagaaatatcaacagcct 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3614 gcacggctgataatataaaccgtaaatatactattgaagggcaagaaatatcaacagcct 3673
Query: 644 tggcactgatactgcatagagataagatggcagatatcgaagctagaactattattaacg 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3674 tggcactgatactgcatagagataagatggcagatatcgaagctagaactattattaacg 3733
Query: 704 cggctccaagcgtagtgagaggggtatttttgcactttacaaaatattctgaatggtcca 763
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3734 cggctccaagcgtagtgagaggggtatttttggactttacaaaatattctgaatggtcca 3793
Query: 764 ctttcattaaggaaatatcaccaagtgacaaacaagaaggcccagtgccagggaaaaggt 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 3794 ctttcattaaggaaatatcaccaagtgacaaacaagaaggcccagtgccagggaaaggtt 3853
Query: 824 tacaaggttctattggatttc-acgggggatctcctcaaaagatgg-ttcagtttgtatc 881
||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| |||
Sbjct: 3854 tac-aggttctattggatttcgacgggggatctcctcaaaagatggctccagttgtcatc 3912
Query: 882 acaaactccgacgcatatttttcttggaccggtgtttttggtgtcaagtccgtgttc 938
||||||||||||||| | ||||||||||| |||||| | ||||||||||||||||||
Sbjct: 3913 acaaactccgacgcagaattttcttggacgggtgttctgggtgtcaagtccgtgttc 3969
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,060
Number of Sequences: 1807
Number of extensions: 13060
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)