International Summer School

   From Genome to Life:

    Structural, Functional and Evolutionary approaches

 


FORTERRE Patrick

Institut de Génétique et Microbiologie -, Université Paris Sud -, 91405 Orsay, France

title: Origin and evolution of DNA and DNA replication mechanisms : the viral connection

Patrick Forterre, Jonathan Filée and Hannu Myllykallio

Comparative genomics associated to molecular phylogenetic analyses have produced during the last decade a wealth of new data that can be tentatively used to reconstruct early cellular evolution (1). In particular, it is now clear that essential enzymatic activities required for production and replication of DNA have been invented several times independently. For example, we have recently identified two evolutionary unrelated families of type II DNA topoisomerases and thymidylate synthases (2,3). It is also evident that at least two different mechanisms for DNA replication are present in the cellular world (4) and that many DNA viruses encode their own version of DNA replication mechanism. We have recently detected a case of non orthologous displacement of a bacterial DNA polymerase by a viral DNA polymerase in mitochondria (5). Non orthologous displacement of cellular proteins by viral functional analogs could explain why DNA replication proteins in Archaea and Bacteria are so different (6), despite a similar mode of replication in the two prokaryotic domains (7). These observations suggest an important role for viruses in the origin and evolution of DNA and DNA replication mechanisms.

1. Forterre, P. (2001) Genomics and early cellular evolution: the origin of the DNA world, C. R. Acad. Sci. (Paris) 324, 1067-1076

2. Bergerat A, de Massy B, Gadelle D, Varoutas PC, Nicolas A, Forterre (1997) An atypical topoisomerase II from Archaea with implications for meiotic recombination. Nature. 386, 414-417.

3. Myllykallio H, Lipowski G, Leduc D, Filee J, Forterre P, Liebl U. (2002) An Alternative Flavin Dependent Mechanism for Thymidylate Synthesis. Science. 2002 in press

4. Leipe, D.D., Aravind, L., and Koonin, E.V. (1999) Did DNA replication evolve twice independently ? Nucleic Acids Res 27:3389-3401

5. Filee J, Forterre P, Sen-Lin T, Laurent J. (2002) Evolution of DNA polymerase families: evidences for multiple gene exchange between cellular and viral proteins. J Mol Evol. 54, 763-73.

6. Forterre, P. (1999) Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins, Mol Microbiol 33:457-465.

7. Myllykallio, H., Lopez , P., Lopez-Garcia, P., Heilig, R., Saurin, W. Zivanovic, Y., Philippe, H., Forterre, P. (2000) Bacterial Mode of Replication with an Eukaryotic-Like Machinery in a Hyperthermophilic Archaeon Science, 288, 2212-2215.