Laboratoire d'enzymologie
et de Biologie Structurale, CNRS, Bat 34 1 Avenue
de la Terrasse, Gif S Yvette 91 198,
France
title:
structural genomics
Large genomic
sequencing has changed the scope of biological
sciences. A tremendous amount of sequence
information is poured down every day into the
sequence data bases. Information extraction from
these data is of paramount importance and its use
is at the centre of competitive struggle between
pharmaceutical companies. Structural genomics or
structural proteomics as some people prefer to call
it, is in principle concerned with the three
dimensional structure of all the proteins in the
universe. Structural information is very powerful
for the comprehension of the working mechanisms of
macromolecules at the molecular level. Structural
genomics is therefore of main interest for the
pharmaceutical industry : the three dimensional
structure of biomedical target proteins can be
exploited to develop small molecule effectors
against diseases. At the fundamental level
structural genomics is a cornerstone of functional
genomics: the uncovering of the biochemical and
cellular function of all expressed orfs in an
organism. Structure allows to establish evolutional
relationships beyond what can be achieved by
sequence comparison alone. The difficulty of
obtaining protein structures is orders of
magnitudes bigger than for determining protein
sequence. Despite this sobering gap, systematic
efforts are conducted all over the world towards
setting up systematic high throughput structure
determination. Many technological developments
continue indeed to speed up the structure
determination process. In a near future these
efforts will provide us with a protein structure
dictionary and one will have some structural
information on all existing proteins. This
information can be used to
:
- deduce
function from unknown proteins
- make
molecular models of related proteins which can
then serve biochemical studies
- predict
interactions with small molecule effectors or
protein partners.
This
presentation will develop the concept of structural
genomics and will try to answer to the following
questions: What is structural genomics precisely
about ? Are there more than one way to define it.
What are the reasons that it all starts now ? How
many structures have to be determined and what can
we do with these structures ? Are we better off
with protein structures to obtain their function
compared to other approaches ? What will we do when
every protein structure has been determined ? Will
this be the end of experimental structural biology
?
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