GAPPED-BLAST search in LBMGE Genomes DataBase.
Similarity searches are performed with GAPPED-BLAST (BLAST 2.2.3 [May-13-2002] NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the Genome DataBase and sequence type you want to match.
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Acidobacteria Clones & Complete Genomes
Select all clear all
choose the correct tool for each database
Enter your sequence here:
Select at least one Genome DataBase and the appropriate tool and type your query sequence below
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Display full alignements in graphics
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Output Alignment: (options not available with blastx and tblastx)
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Select DataBase Type:
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(n= Nucleic ) (a= Amino )
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blastn: n<->n
blastp: a<->a
blastx: n<->a
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tblastn: a<->n
tblastx: n<->n
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Select Groups of Genomes:
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Select Genomes within groups:
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Bacteriophages complete genomes
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Blast Advanced Options:
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Expect value (E)
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[Real]
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Matrix
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Filter query sequence (DUST with blastn, SEG with others)
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| Word Size |
[Integer] |
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Cost to open a gap
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[Integer]
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Cost to extend a gap
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[Integer]
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X dropoff value for gapped alignment (in bits)
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[Integer]
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Reward for a nucleotide match
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[Integer] (blastn only)
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Number of one-line descriptions (V)
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[Integer]
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Number of alignments to show (B)
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[Integer]
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Threshold for extending hits
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[Integer]
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Penalty for a nucleotide mismatch (blastn only)
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[Integer]
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Perform gapped alignment
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(not available with tblastx)
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