ICON LBMGE

Bacteriophage T5
Genome Sequencing Project

a joint project by:

Transports Membranaires de Macromolécules, IBBMC Orsay France
LBMGE IGM, Orsay France
EAN IGM, Orsay France

T5 st0 mutant + wt insertion: sequence finished 02/04

121446 bp total length : 113238 nt strain st0 deletion mutant + 8208 bp insertion from wt strain HER28 (Reference Center For Bacterial Viruses, Laval University, Quebec, Canada)

GenBank accession numbers: AY692264 (st0 mutant) and AY734508 (wt insertion)

Last modification: Wed Sep 10 2008 17:44:20


Start browsing T5 chromosome: Initial settings will display map showing full genome range ( 1-121444 nt)
Bacteriophage T5	Links (click to open)	Genome length	Database Status	Additionnal info
Complete Chromosome	opens full length genome map (1-121446 nt). Use "Zoom in" button to narrow display range Additionally display alignment of 2 other bacteriophage T5 strains (GenBank acc.: AY543070 & AY587007)	121446bp	Annotation finished GenBank acc #: AY692264 (113238 nt st0 mutant) AY734508 (8208 nt wt insertion)	Wild type strain reconstructed sequence Sequence revision 6
Access to Genome Map and Annotation data:
*Annotation Database Search Form* : search currently available annotations and more in Bacteriophage T5 database
*Matched Database Search Form*: Explore Bacteriophage T5 orfs hits in following public ressources Similarity in GenBank NR protein sequence database (Jan 19, 2004) Similarity in SWISSPROT protein sequence database ( release 41.O) Pattern matches in Pfam (version 8) database using HMMER Similarity in COG + KOG (7 eukaryal genomes) with function prediction
Sequences Retrieval and Mining:
*Blast search* in T5: go to blast page here
*T5 Genome Guts* : retrieve genome sequences and inner parts
*T5 nucleotidic sequence* = final sequence (revision 5)
*T5 orfs* ( > 30 aa )
*T5 orfs* - nucleic ( > 90 nt )
*T5 repeats page* - Exact direct and inverted repeats in T5 genome - Minimun size = 10nt //Direct sequence access

Problems/Questions: yvan.zivanovic@igmors.u-psud.fr