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Thermococcus gammatolerans
Genome Sequencing Project
a joint project by:
LBMGE IGM, Orsay France
EAN IGM, Orsay France
Thermococcus gammatolerans
Genome Sequencing Project
Genome Sequencing Project
LBMGE IGM, Orsay France
EAN IGM, Orsay France
EAN IGM, Orsay France
Thermococcus gammatolerans : 03/04
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Wild type strain |
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Browse & annotate complete genome |
opens a 1-100000 nt range genome map. |
Annotation closed |
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Jump directly to an element: |
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Annotation Database |
search currently available annotations and more in Thermococcus gammatolerans database |
open access | |||
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Complete Annotations |
complete annotation data |
open access | |||
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Matched Database Search Form |
complete orfs hits in public ressources (1) |
open access | |||
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Kegg Pathways Database |
data display by pathway maps, genes and KEGG entries (2) |
open access | |||
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Cd ++ Transcriptome |
mining tools and motifs search for Cd++ transcriptome data |
open access | |||
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Gamma-Irradiation Transcriptome |
mining tools for gamma-Irradiation transcriptome data |
restricted access | |||
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Blast search |
blast in T. gammatolerans sequence databases |
open access | |||
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Genome Guts |
retrieve genome sequences and inner parts |
open access | |||
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Genome nucleotidic sequence |
retrieve complete genome sequence (revision 0) |
open access | |||
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Orfs sequence (amino) [TGAM_ORF0 database] |
retrieve orfs sequences ( >= 30 aa ) |
open access | |||
| Genes sequence (amino) [TGAM_CDS1 database] | retrieve all T. gammatolerans gene sequences | open access | ||||
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Orfs sequence (nucleic) |
retrieve orfs sequences ( >= 90 nt ) |
open access | |||
| Gene Nomenclature Cross Reference | text processing utility for gene renumbering | open access | ||||
| Functional categories overview | Complete T. gammatolerans functional categories overview (genome clickable map) | open access | ||||
| COG categories exploration | T. gammatolerans COG functional categories accessible via tree-based navigation interface | open access | ||||
| Tgam clone library | T. gammatolerans 75, 10 and 3 kb genomic clones library deployment | open access | ||||
| -(1) Similarity in GenBank NR protein sequence database (Jan 19, 2004); Similarity in SWISSPROT protein sequence database ( release 41.O); Pattern matches in Pfam (version 8) database using HMMER; Similarity in COG + KOG (7 eukaryal genomes) with function prediction; Hits in CDD (rpsBlast) : CDD.v.2.10; COG.v.1.0; KOG.v.1.0; Pfam.v.11.0; SMART.v4.0 ; Hits in InterPro (Interproscan) : INTERPRO v.12.1 ; PRINTS v.38.0 ; PROSITE v.19.10 ; PFAM v.19.0 ; PRODOM v.2004.1 ; SMART v.5.0 ; TIGRFAMs v.4.2 ; GO v.N/A ; SSF v.1.65 ; PIRSF v.2.68 ; GENE3D v.3.0 ; PANTHER v.6.0 ;; Transmembrane regions (modhmm0.91) -(2) T. gammatolerans genes were blasted vs  database at 3 different similarity levels to allow reconstruction of various pathways |
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Problems/Questions: yvan.zivanovic@igmors.u-psud.fr