ICON LBMGE



VAMPIROCOCCUS database

hosted by: UMR9198 I2BC Centre Universitaire d'Orsay Batiment 400, Orsay France


Sequence info:
V7/V9 reads pool (MDA) Spades assembly +
ESOM clustering +
merge with matching sequences from V7/V9/V12 reads pool (MALBAC) megahit assembly
final sequence: 02/19/2016
103 contigs in putative VAMPIROCOCCUS cluster (validation :finished)
Last modification: Wed Sep 13 2023 17:44:48

  

 

  
  Contig library Stats
Criteria selection panel 		Selected contigs
Click on to access contigs maps
Click on contig name to access contigs' genes sequences and definitions 		Database/link Status  

 
Contig library feature selection
contig current status:
a)contig contains gene(s) with best hit belongs to domain:
b)and/or genes best hit lineage contain:
Matches only full names
c) category contains
COG number contains
 
Contig library data display options
Number of contigs to display:
Type of stats to display:

a) Contigs that contain at last 1 gene whose best hit is in domain
b) Contigs that contain at last 1 gene whose best hit lineage matches keyword  (valid terms are suggested upon typing)
c) Contigs that contain at last 1 gene whose COG category/function best guess matches keyword

.. loading data ...

Open

 

 

Blast search:

Blast in Vampirococcus sequence databases

Open

 
 

Annotation Database:

search currently available annotations

Open

 

  

Similarity & motifs matched in public databases:

Mining complete orfs matches in public ressources

Open

 

  

COG data exploration:

Mining COG information in annotation database

Open

 

  

Chiprana recruitement plots:

Recruitement plots of Chiprana raw reads datasets on Vampirococcus contigs

Open

 
 

Genome Guts:

retrieve genome sequences and inner parts

Closed

 

  

Nucleotidic sequence:

retrieve complete sequences

Closed

 

  

Gene's sequences (amino):

Retrieve gene's sequences

Closed

 

 

Genes sequences (nucleic):

retrieve gene's sequences

Closed

 

 

Synteny analysis:

synteny / gene relations exploration page

Closed

 

 

Gene relations:

gene similarity relations and contig synteny exploration page

Closed

 
     

 

Problems/Questions: yvan.zivanovic@i2bc.paris-saclay.fr