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Verrucobacteria & Other clonesProject
a joint project by:
Unité d'Ecologie, Systématique et Evolution
CNRS UMR8079 Université Paris-Sud 11, bâtiment 360,
Institut de Genetique et Microbiologie
UMR C8621 Centre Universitaire d'Orsay Batiment 400,
Orsay France
Verrucobacteria & Other clonesProject
Unité d'Ecologie, Systématique et Evolution
CNRS UMR8079 Université Paris-Sud 11, bâtiment 360,
Institut de Genetique et Microbiologie
UMR C8621 Centre Universitaire d'Orsay Batiment 400,
Orsay France
CNRS UMR8079 Université Paris-Sud 11, bâtiment 360,
Institut de Genetique et Microbiologie
UMR C8621 Centre Universitaire d'Orsay Batiment 400,
Orsay France
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Sequence info: Verrucobacteria and other clones |
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| Opens a 50000 nt range genome map Use "Zoom in" button to change display range |
Clones Info | GC% total |
GC% (no RNA) |
Coding density |
Coding density (no RNA) |
Info | Taxonomic affiliation | Database/link Status | ||||||||||||||
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Clone AD12-A11
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34211 nt. | 63 % | % | % | % |
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Actinobacteria |
Open |
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Clone AD17-E3
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32315 nt. | 63 % | % | % | % |
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Open |
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Clone AD45-G12
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43416 nt. | 59 % | % | % | % |
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Verrucomicrobia 7
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Open |
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Clone AD66-C11
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34790 nt. | 50 % | % | % | % |
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Gemmatimonadetes
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Open |
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Clone AD106-G5
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34837 nt. | 57 % | % | % | % |
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Lentisphaera/Verrucomicrobia
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Open |
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Clone AD243-C9
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35091 nt. | 53 % | % | % | % |
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Verrucomicrobia 3
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Open |
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Clone AD249-B8
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37469 nt. | 54 % | % | % | % |
inverted
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Verrucomicrobia 7
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Open |
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Clone AD254-A9
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33223 nt. | 62 % | % | % | % |
Inverted, = tested with blast
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Gemmatimonadetes
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Open |
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Clone AD257-B4
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43833 nt. | 55 % | % | % | % |
Inverted, =
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Acidobacteria
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Open |
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Clone AD261-B2
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37395 nt. | 41 % | % | % | % |
Inverted
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Marine = group A
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Open |
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Clone AD264-E4
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19314 nt. | 37 % | % | % | % |
No 23S, no = 5S present
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SBR1093
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Open |
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Clone SAT52-B4
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34895 nt. | 55 % | % | % | % |
Verified = with blast 16S
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Acidobacteria
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Open |
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Annotation Database: |
search currently available annotations and more in Verrucobacteria &Other Clones database |
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Complete Annotations data: |
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Matched Database Search Form: |
complete orfs hits in public ressources (1) |
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Blast search: |
Blast in Verrucobacteria &Other Clones sequence databases |
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Genome Guts: |
retrieve genome sequences and inner parts |
Open |
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Genome nucleotidic sequence: |
retrieve complete genome sequence (revision 0) |
Closed |
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Orfs sequence (amino): |
retreive orfs sequences ( >= 30 aa ) |
Closed |
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Orfs sequence (nucleic): |
retreive orfs sequences ( >= 90 nt ) |
Closed |
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| -(1) Similarity in GenBank NR protein sequence database (Jan 19, 2004); Similarity in SWISSPROT protein sequence database ( release 41.O); Pattern matches in Pfam (version 8) database using HMMER; Similarity in COG + KOG (7 eukaryal genomes) with function prediction; Hits in CDD (rpsBlast) : CDD.v.2.10; COG.v.1.0; KOG.v.1.0; Pfam.v.11.0; SMART.v4.0 ; Hits in InterPro (Interproscan) : INTERPRO v.12.1 ; PRINTS v.38.0 ; PROSITE v.19.10 ; PFAM v.19.0 ; PRODOM v.2004.1 ; SMART v.5.0 ; TIGRFAMs v.4.2 ; GO v.N/A ; SSF v.1.65 ; PIRSF v.2.68 ; GENE3D v.3.0 ; PANTHER v.6.0 ;; Transmembrane regions (modhmm0.91) |
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Problems/Questions: yvan.zivanovic@igmors.u-psud.fr