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Click to Close contigs panel
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Assembly Info
Click on individual contigs to access contigs maps
Click on genes numbers to acces contigs' genes sequences and definitions |
Database/link Status |
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Library Stats
a) Phylogeny/lineage confidence level is defined as follows:
- Strong: max% of genes with same lineage >= 70% or max% lin >= 50 & domain number =1
- Weak: max% of genes with same lineage < 30% or max% lin < 50 & domain number >2
- Orphan : no genes with phylogeny info
- No genes: no CDS in contig
- Medium : all the rest
b) Contigs that contain at last 1 gene from this domain
c) Contigs that contain at last 1 gene with the given lineage keyword (valid terms are suggested upon typing)
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Duplicated sequences info : 4458 unique sequences duplicated
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Open
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AQ_VIROME_FEE
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Direct jump to contig maps:
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Open
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Blast search:
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Blast in AQ_VIROME sequence databases
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Open
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Synteny analysis:
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synteny / gene relations exploration page
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Closed
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Gene relations:
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gene similarity relations and contig synteny exploration page
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Closed
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Annotation Database:
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search currently available annotations in aq_virome database
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Open
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Matched Database Search Form:
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Mining complete orfs matches in public ressources
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Open
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Genome
Guts:
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retrieve genome sequences
and inner parts
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Closed
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Nucleotidic sequence:
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retrieve complete sequences
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Open
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Gene's
sequences (amino):
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Retrieve gene's sequences
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Open
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Genes
sequences (nucleic):
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retrieve gene's sequences
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Open
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