Thermococcus gammatolerans
Matches in Public DataBases
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- Push the "Search" button after entering your criteria (multiple choices are allowed).
- Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces.
- Regular expressions (POSIX 1003.2) are possible with the following operators: '.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".

Orf ID: contains starts with is

(type a orf number eg : tgam10037)

Hits in GenBank nr: contains starts with is

Any High At least Medium At least Low Only Medium Only Low Not Hit

Hits in SWISSPROT: contains starts with is

Any High At least Medium At least Low Only Medium Only Low Not Hit

Hits in HMMER PFAM: contains starts with is

Any High At least Medium At least Low Only Medium Only Low Not Hit

COG category: contains starts with is

Any Good Normal or Good Check, Normal or Good Suspect, Check, Normal or Good Only Normal Only Check Only Suspect Not Hit

COG number

 COG function:

Any --INFORMATION STORAGE AND PROCESSING J Translation, ribosomal structure and biogenesis A RNA processing and modification K Transcription L Replication, recombination and repair B Chromatin structure and dynamics --CELLULAR PROCESSES AND SIGNALING D Cell cycle control, cell division, chromosome partitioning Y Nuclear structure V Defense mechanisms T Signal transduction mechanisms M Cell wall/membrane/envelope biogenesis N Cell motility Z Cytoskeleton W Extracellular structures U Intracellular trafficking, secretion, and vesicular transport O Posttranslational modification, protein turnover, chaperones --METABOLISM C Energy production and conversion G Carbohydrate transport and metabolism E Amino acid transport and metabolism F Nucleotide transport and metabolism H Coenzyme transport and metabolism I Lipid transport and metabolism P Inorganic ion transport and metabolism Q Secondary metabolites biosynthesis, transport and catabolism --POORLY CHARACTERIZED R General function prediction only S Function unknown

Phylogenetic domain pattern:

Any Thermococcus specific Archaea only Archaea & Bacteria only Archaea then Bacteria Archaea & Eucarya only Archaea then Eucarya Thermococcus but not Archaea No Hits

Paralogs copy #: equals is >= is <=

Any 0 1 2 3 4 5 6 7 8 9 10

Coding Probability (HMM):

Any Coding Coding but overlap problem Coding and no overlap problem Not coding

Return no more than:

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Choose DataBase entries to display:
Item/Orf ID Match level for GenBank nr Expect value for GenBank nr best match Best match in GenBank nr Match level for swissprot Expect value for swissprot best match Best match in swissprot Phylogenetic domain pattern Match level for HMMER Pfam Expect value for HMMER Pfam best match Best match in HMMER Pfam Match level for Full Genomes Expect value for Full Genomes best match Best match in Full Genomes Confidence level for GOG COG function category COG number COG function and pathway Paralogs copy number Paralogs candidates HMM Coding probability Transmembrane regions InterPro data CDD results KEGG results
(multiple choices are allowed)