ICON LBMGE



Thermococcus gammatolerans
Annotation DataBase Search form

 

 

-> Back to T. gammatolerans Home Page

- Push the "Search" button after entering your criteria (multiple choices are allowed).
- Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces.
- Regular expressions (POSIX 1003.2) are possible with the following operators: '.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".

 

Display Item info for :

Orf ID:

in (type a orf number eg : tgam10038 )

Description:


(type a gene description eg : "polymerase")

Best Match in DataBases:

Hit Level:

Max Expect:

Comment:

GenBank nr:

Gene Name:


(type a gene name eg : "his")

SWISSPROT:

EC number:


(type an EC number eg : "6.1.1.2")

PFAM:

Gene Coding probability:

COG category:

 

Phylogenetic domain pattern:

COG function:
      
COG number:

Category: 

Full Genomes:

 

COG number:

or :

Phylogenetic domain pattern:

   

Coding Probability (HMM):  

Paralogs copy #:
MS proof

Number of membrane regions:

  N-terminus:
Location is Between
and on chromosome coordinates

Reliability score (0- 1.0):

  TransMembrane :

aa.

Annotation method is:
(or author :)
Hits in INTERPROSCAN contain:
 and/or have a match with Tool
Tkod Functional classification:
Hits in CDD contain:
 and/or have a match with Tool
Item Type:
Hits in KEGG contain:
at Expect threshold
Status:
  or pathway :
Order by:
Orthologs in T. kodakaraensis:
and
Gene Size:
Between and
Orthologs in Thermococcales:
 and
  Strand:
Homologs in Thermococcales:
 and
Homologs in T. kodakaraensis:
 and

Output Options:

Return no more than:

answers

Output format:
Prepare Output for mapping : (HTML output format only)

Choose items to display from
ANNOTATION DATABASE:

Choose items to display from
MATCHES IN PUBLIC DATABASES:

Additional items to display:


Don't show DELETED items
Show only last annotation


Questions, comments & bug reports to : yvan.zivanovic@igmors.u-psud.fr