Sulfolobus solfataricus P2 complete genome sequencing project

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The complete genome of the Crenarchaeote Sulfolobus solfataricus P2
Qunxin She, Rama K. Singh, Fabrice Confalonieri, Yvan Zivanovic, Ghislaine Allard, Mariana J. Awayez, Christina C-Y Chan-Weiher, Ib Groth Clausen, Bruce A. Curtis, Anick De Moors, Gael Erauso, Cynthia Fletcher, Paul M. K. Gordon, Ineke Heikamp-de Jong, Alex C. Jeffries, Catherine J. Kozera, Nadine Medina, Xu Peng, Hoa Phan Thi-Ngoc, Peter Redder, Margaret E. Schenk, Cynthia Theriault, Niels Tolstrup, Robert L. Charlebois, W. Ford Doolittle, Michel Duguet, Terry Gaasterland, Roger A. Garrett, Mark A. Ragan, Christoph W. Sensen and John Van der Oost

Submitted to PNAS Feb., 2001

Published in Proc. Natl. Acad. Sci. USA, Vol. 98, Issue 14, 7835-7840, July 3, 2001

GenBank accession number AE006641

Supported by:
European grant BIO4CT-960270.
Canadian Genome Analysis and Technology Program (grant GO12319)
National Research Council of Canada (Institute for Marine Biosciences)

R.L. Charlebois    rlcharl@home.com
F.   Confalonieri  confalonieri@igmors.u-psud.fr
W.F. Doolittle     ford@is.dal.ca
M.   Duguet        duguet@igmors.u-psud.fr
R.A. Garrett       garrett@mermaid.molbio.ku.dk
M.A. Ragan         m.ragan@imb.uq.edu.au
Q.   She           qunxin@mermaid.molbio.ku.dk
R.K. Singh         rama.singh@nrc.ca
J.   Van der Oost  john.vanderoost@algemeen.micr.wau.nl
Y.   Zivanovic     yvan.zivanovic@u-psud.fr

Contact for this database : yvan.zivanovic@u-psud.fr.

Link to database in Canada : http://niji.imb.nrc.ca/sulfhome/

Sequence:

Annotation:

• P2 full genome
  complete most recent genome sequence [nucleic]
  
• P2 Genes [amino]:
  Genes and their most recent annotation, fasta format
  
• P2 Genes [nucleic]:
  Genes and RNA elements in their most recent annotation, fasta forrmat
  
• Blast_Search in P2 Genome
  for BLASTing P2 genome (and others), local server in Orsay.
  
• P2 sequence & orfs retrieval
  Access to nucleic and amino sequences of orfs, orfs location and genomic sequence spanning specific range
  
• Frameshifts
  list of putative frameshifts identified in Orsay
  
• Genomes & Genes
  Multi-purpose gene and annotation retriever
  This is where you can instantly retrieve any gene sequence (Sulfolobus, as well as any other gene from our local complete genomes database
  

• Annotation_Search_Form
  Search Sulfolobus P2 annotation DataBase . Multiple search criteria are possible
  
• Full annotation
  complete list of all annotations currently available. Annotation is finished
  in public databases under accession number AE006641
  
• P2 Gene functional categories
  Sulfolobus P2 genes arranged by functional categories.
  
• COG hits
  a list of Sulfolobus P2 complete genes vs COG database , with function prediction.
  
• pI and MW
  Some physical constants.
  

Extra features:

• S. solfataricus P2 vs S. tokodaii genomes alignment
  Genes from both genomes were matched and dot plotted
  Direct access to genomes comparison at gene level
  

 

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