Acidobacteria Clones Public DataBases Matches Search form

-> Back to Acidobacteria Home Page - Push the "Search" button after entering your criteria (multiple choices are allowed). - Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces. - Regular expressions (POSIX 1003.2) are possible with the following operators: '.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains". Display Item info for : Choose clone database : Select all    clear all L35480_AD106_G4 L35496_AD370_D1 L35893_AD248_D7 L35507_KM3_205_D9 L35498_AD55_D2 L35501KM3173A5c1 L35504_KM3_187_G1 L35505_KM3_18_F8 L35_B8_D2 L35511_KM3_47_B8 L35509_KM3_25_B4 L35501KM317A5c2 L35516_KM4_9_H7 AY214600 Orf ID: contains starts with is Select genes only (excluding AY214600 clone) Best Match in DataBases: Hit Level or Max Expect (Pvalue): Hits in GenBank nr: contains starts with is Hits in SwissProt: contains starts with is Hits in Acidobacteria : contains starts with is COG : contains starts with is Any Good Normal or Good Check, Normal or Good Suspect, Check, Normal or Good Only Normal Only Check Only Suspect Not Hit  COG function: Any --INFORMATION STORAGE AND PROCESSING J Translation, ribosomal structure and biogenesis< A RNA processing and modification K Transcription L Replication, recombination and repair B Chromatin structure and dynamics --CELLULAR PROCESSES AND SIGNALING D Cell cycle control, cell division, chromosome partitioning Y Nuclear structure V Defense mechanisms T Signal transduction mechanisms M Cell wall/membrane/envelope biogenesis N Cell motility Z Cytoskeleton W Extracellular structures U Intracellular trafficking, secretion, and vesicular transport O Posttranslational modification, protein turnover, chaperones --METABOLISM C Energy production and conversion G Carbohydrate transport and metabolism E Amino acid transport and metabolism F Nucleotide transport and metabolism H Coenzyme transport and metabolism I Lipid transport and metabolism P Inorganic ion transport and metabolism Q Secondary metabolites biosynthesis, transport and catabolism --POORLY CHARACTERIZED R General function prediction only S Function unknown Hits in MetaGenomes : contains starts with is Hits in Uncultured marine end sequences: contains starts with is Hits in Full Genomes: contains starts with is Output Options: Return no more than: 10 25 50 75 100 200 500 Unlimited answers Order by: Name nr Expect nr Match SwissProt Expect SwissProt Match Acidobacteria Expect Acidobacteria Match COG Expect COG Match Metagenomes Expect Metagenomes Match Uncultured marine ends Expect Uncultured marine ends Match Full genomes Expect Full genomes Match Output format: HTML (Default) Plain text Plain text-Table XML Vertical (row) Item/Orf ID Expect value for GenBank nr best match Best match in GenBank nr Expect value for swissprot best match Best match in swissprot Expect value for Acidobacteria best match Best match in Acidobacteria Expect value for Full Genomes best match Best match in Full Genomes Expect value for MetagGenomes best match Best match in MetagGenomes Confidence level for COG COG category,function and pathway Uncultured marine clone ends Best Hit Expect Uncultured marine clone ends Best Match Questions, comments & bug reports to : yvan.zivanovic@igmors.u-psud.fr