Acidobacteria Clones Annotation DataBase Search form

-> Back to Acidobacteria Home Page - Push the "Search" button after entering your criteria (multiple choices are allowed). - Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces. - Regular expressions (POSIX 1003.2) are possible with the following operators: '.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".   Display Item info for : Choose clone database : Select all    clear all L35480_AD106_G4 L35496_AD370_D1 L35893_AD248_D7 L35507_KM3_205_D9 L35498_AD55_D2 L35501KM3173A5c1 L35504_KM3_187_G1 L35505_KM3_18_F8 L35_B8_D2 L35511_KM3_47_B8 L35509_KM3_25_B4 L35501KM317A5c2 L35516_KM4_9_H7 AY214600 Orf ID: contains starts with is Description: contains starts with is (type a gene description eg : "polymerase") Comment: Gene Name: contains starts with is (type a gene name eg : "his") EC number: contains starts with is (type an EC number eg : "6.1.1.2") Gene Coding probability: Any Coding Coding but overlap problem Coding and no overlap problem Not coding Phylogenetic domain pattern: Any Thermococcus specific Archaea only Archaea & Bacteria only Archaea then Bacteria Archaea & Eucarya only Archaea then Eucarya Thermococcus but not Archaea No Hits COG KOG Category:  Any --INFORMATION STORAGE AND PROCESSING J Translation, ribosomal structure and biogenesis A RNA processing and modification K Transcription L Replication, recombination and repair B Chromatin structure and dynamics --CELLULAR PROCESSES AND SIGNALING D Cell cycle control etc... Y Nuclear structure V Defense mechanisms T Signal transduction mechanisms M Cell wall/membrane/envelope biogenesis N Cell motility Z Cytoskeleton W Extracellular structures U Intracellular trafficking etc.. O Posttranslational modification etc.. --METABOLISM C Energy production and conversion G Carbohydrate transport and metabolism E Amino acid transport and metabolism F Nucleotide transport and metabolism H Coenzyme transport and metabolism I Lipid transport and metabolism P Inorganic ion transport and metabolism Q Secondary metabolites biosynthesis etc... --POORLY CHARACTERIZED R General function prediction only S Function unknown COG number:               -- or : contains starts with is Location is Between and on chromosome coordinates Annotation author is: Item Type: Any Protein RNA tRNA Promoter Feature Intron Status: Any ADDED DELETED Order by: Name Date Location Strand COG category COG number Author Phylo domain pattern Gene Size Gene Size: Between and   Strand: Any Direct Reverse Output Options: Return no more than: 10 25 50 75 100 200 500 Unlimited answers Output format: HTML (Default) Plain text Plain text-Table XML Vertical (row) Choose items to display from ANNOTATION DATABASE: Item/Orf ID Start coordinates End coordinates Description Intron info Start codon Strand Annotation Status Gene Name E.C. Number Gene Product Comment More Comments Item type COG category COG number Phylogenetic domain pattern author Time stamp Choose items to display from MATCHES in PUBLIC DATABASES: Expect value for GenBank nr best match Best match in GenBank nr Expect value for swissprot best match Best match in swissprot Expect value for Acidobacteria best match Best match in Acidobacteria Expect value for Full Genomes best match Best match in Full Genomes Expect value for MetagGenomes best match Best match in MetagGenomes Confidence level for COG COG category,function and pathway Uncultured marine clone ends Best Hit Expect Uncultured marine clone ends Best Match Don't show DELETED items Show only last annotation Choose additional items to display: Sequence only Sequence & Annotation Sequence length Strand ( Questions, comments & bug reports to : yvan.zivanovic@igmors.u-psud.fr