Pyrococcus abyssi



    Annotation DataBase Search Form

Enter criteria to find out about. Matches are not case sensitive.
Click on the submit button after entering your criteria.

- Boolean queries are possible with the following operators :'or', 'and', ' not'. Separate these keywords with spaces.
- Regular expressions (POSIX 1003.2) are possible with the following operators: '
.' (period), '+', '*', '?', '^', '$', '{n}', "|' , '[ ]'. Do NOT separate items with spaces and choose "contains".

Search in annotation:

Description Annotation:

Gene Name:

Functional Category:


Both Direct Reverse

Orf Status

Any possible Putative Gene not a Putative Gene

Gene Location is within:

and nucleotides (*)

Orf Length is within:

and amino acids (*)

Search similarity:

COG Hit:

COG /Pathways and functional systems:

Domain Pattern:

Search aa composition:

Values are expressed as offset from mean genome value

(Charged - Polar):

Between: and :   (range : -0.47 - 0.33)


        Click here to enlarge

Output Format:

 Return no more than:


(*) Leave blank if seeking full genome range

 P. abyssi is 1765118 nucleotides long.

Full P. abyssi genome screened for 30 aa. and more orfs using ATG, GTG and TTG start codons yielded 12540 orfs which are in the Orfs DataBase.

Note: if a form input is left blank, then no matching is done on the field.

Last revision on 23/01/04

DataBase administrator

Laboratoire de Biologie Moléculaire du Gène chez les Extrêmophiles.