K. lactis : K lactis 10x Unfinished (released: 02/05/03)

Warning : K.lactis 10x assembly is not the final release of the sequence ! Warning : new gene numering with this assembly version !   Current status for this assembly : # of contigs Size # of orfs (¼ 40 aa) Chromosome I 1 1062590 3167 Chromosome II 1 1316150 3837 Chromosome III 1 1749442 4934 Chromosome IV 1 1670249 4842 Chromosome V 1 2231564 6505 Chromosome VI 1 2596692 7440 Mitochondria 0 - - TOTAL 6 10626687 30727 Preliminary analysis on this set of 30727 orfs: -> Blasted vs YEAST_CDS database ( from L. Frangeul /Pasteur) : no filtering / Expect limited to 1.0 -> Blasted vs SWISSPROT+trEMBL database ( from EMBL 09/05/03) : no filtering / Expect limited to 1.0 -> Blasted vs C. albicans database ( assembly #6 of Stanford University ) : no filtering / Expect limited to 1.0 -> Run through Glimmer2.0 (TIGR) to determine coding probability : HMM Results are grouped by chromosome: Chromosome I Chromosome II Chromosome III Chromosome IV Chromosome V Chromosome VI Mito Legend for these tables: YEAST_CDS Calbicans SP+trEMBL       Column: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18   ORF Orf size HMM Glimmer prediction match match size match Expect match score match match size match Expect match score match match size match expect match score YEAST_CDSmatch Definition line Calbicans match Definition line SP+trEMBL match Definition line Example r_klactVI1038 1190 ++ YOR330c 1259 0 1202 CA4033 1228 0 937 YEAST 0 1254 1279 YOR330c SP P15801 MIP1 DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial singleton CA4033 IPF19795 similar to Saccharomyces cerevisiae Mip1p DNA-directed DNA polymerase gamma catalytic subunit, mitochondrial DPOG_YEAST (P15801) DNA polymerase gamma (EC 2.7.7.7) (Mitochondrial D To access BLAST result click on column 4 (YEAST_CDS), column 8 (C. albicans) and column 12 (SP+trEMBL) To access orf sequence click on column 1