Pyrococcus abyssi

 Genome & re-annotation database

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi

 
Georges Cohen1, Valérie Barbe2, Didier Flament3, Michael Galperin4, Roland Heilig2, Odile Lecompte5, 
Olivier Poch5, Daniel Prieur6, Joël Quérellou3, Raymond Ripp5, Jean-Claude Thierry5, John Van der Oost7, 
Jean Weissenbach2, Yvan Zivanovic8 and Patrick Forterre8.                
                   
1-Institut Pasteur, 25,28 rue du Docteur Roux, 75724 Paris CEDEX 15, France.
2-Genoscope, CNS, 2, rue Gaston Crémieux, CP 5706, 91057 EVRY cedex, France.
3-Ifremer, Centre de Brest, DRV/VP/LMBE, BP 70, 29280 Plouzané, France.
4-National Center for Biotechnology Information, National Institutes of Health, Bethesda, MD 20894, USA.
5-CNRS-IGBMC, BP 163, 1 rue Laurent Fries, 67404 Illkirch, France.
6-Université de Bretagne Occidentale, IUEM, Place Nicolas Copernic, TBI, 29280 Plouzané, France.
7-Wageningen University, Hesselink van Suchtelenweg 4, 6703 CT Wageningen, the Netherlands.
8-Université Paris-Sud, Centre Universitaire d'Orsay, Institut de Génétique et Microbiologie, UMR, CNRS, 8621, Bat 409, 91405 Orsay Cedex, France.         
                  						
Mol Microbiol. 47:1495-512 (2003).
                  
- Supplementary material

Genome display & annotation


Select the P. abyssi region you wish to examine and choose a display mode:

 

Display PopUp Gene Info

Click on the map to
access a region

 

Select a coloring scheme:

Select a region to view:

     

Select a gene environment to view:

(Pab(s)####)
Click here for a large map view

 

-> You will also have access to a simplified re-annotation form

 

Sequence Retrieval:

 

Orf amino & nucleic sequences:

  

 

Retrieve nucleic sequence:

From : to :

 

 

Orfs & Genes Retrieval:

 

List of orfs in a given range:

From : to :

 

 

 

Genes & Orfs : full lists

Genes & Orfs : search sequences & annotation


- Current annotation for all genes
- COG hits
- New annotations
-Complete GenBank Cross Reference
- Domain Patterns:

- Global gene phylogenic domain patterns map

- Gene composition distribution statistics


- Annotation & similarity in DataBases search Form

- Regular BLAST in complete genomes database (local- Orsay)

Comparative genomic maps


- P.abyssi vs. P. horikoshii
- P.abyssi vs. P. furiosus

-3 Pyrococcus Genome Comparison