LBMGE Genomapper

Genomapper BLAST psiBLAST Mulalbla Multalin Genes & Genomes BLAST (restricted) Genome Guts COG Guess INTERPROScan CDD search Pattern search Sequence Patterns COG Trees Genome Syntenizer

Pyrococcus abyssi >PAB1255 valS valyl-tRNA synthetase MLPKKYDPNEIEPKWQKYWLEEKIYKYRLDENKPSYAIDTPPPFTSGTLHLGHVLSHTWIDIIARYKRMRGYNVLFPQGF DNHGLPTELKVEKEFGITKDQPEEFLKKCVEWTWQAIEAMRKQFIRIGYSADWDLEYHTMDDWYKAAVQKSLLEFYKKGL IYREEHPVYWCPKCRTSLAKAEVGYVEEEGYLYYIKLPLADGSGYIPIATTRPELMPACVAVFVHPDDERYKHLVGKKVK LPIYEREVPILADEDVDPNFGTGAVYNCTYGDEQDIVWQKRYNLPVIIAINEDGTMNENAGPYAGLKVEEARKKIAEDLE KMGLLYKKEKIKHRVLRHTERSSCMAPIELLPKKQWFIRVKDFTDEIVKVAKEINWYPEDMFLRLKDWAESMDWDWVISR QRVFGTPFPFWVCKNGHIIPAREEDLPVDPRFDKPPVEKCPVCGAEIEPVTDVLDCWVDSSITPLIITRWHEAIKGDEEA KKWFEHNFPTALRPQGTDIIRTWAFYTIFRTFKLTGKKPWKDIVINGMVAGPDGRKMSKSYGNVVAPDEVIPKYGADALR LWTALAPPGEDHPFKWETVDYNFRFLQKVWNIYRFAERHIKDFDYEKYKDIELEPLDRWILSRLHRIIKFATEELERYRF NLITRELMTFIWHEVADDYIEMVKYRLYGDDEESKLKAKVALYELLYNVMLLLAPFVPHITEEIYHAMFKDKIGEKSVHL LSWPEYREDRIDEKAEKLGELARKVVSEMRKYKNSHGMPLNAKLEHVAIYALESYDDLKLIEKDIAGTMNIEKLEIFKGE PQLEERIVEVKPNYKRIGPRYGKLVPRIVEHLKNNAESIAREIKENGKVEFEIDGEKVELTKEDVMIKKEVFSEGERVET AVVDDIVILFF

Supplementary options
Additional orf sequence data	See Genomic Environment
Search GenBank with PSI-Blast at NCBI	Search Complete Genomes DataBase with Blast at LBMGE
Search InterPro Database at LBMGE	Search CDD Database at LBMGE
Determine COG functional Category (microbial)	Determine COG functional Category (eukarial)
See this orf in P. abyssi Data Base

^__________ GenBank id: 14521851 Gene name: - COG: J COG0525 Valyl-tRNA synthetase Taxon: 272844 Lineage: Archaea: Euryarchaeota: Thermococci: Thermococcales: Thermococcaceae: Pyrococcus: Pyrococcus abyssi: Pyrococcus abyssi GE5
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