Conserved Domains
Query Page

RPS-BLAST search in local Conserved Domains DataBase.

Similarity searches are performed with RPS-BLAST (BLAST 2.2.x NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the CDD DataBase you want to match.



 Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

Enter sequence here: (fasta format or raw text)

   Display full alignements in /Graphics
Before submission you must select at least one Conserved Domain DataBase .


Output Alignment: (options not available with blastx and tblastx)

Select Individual Databases:

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 CD  Pfam  Smart  COG
 KOG
  Tigr
  PrK

Blast Advanced Options:

Expect value (E)

  [Real] 

Query sequence type

 

Filter query sequence (DUST with blastn, SEG with others)

 

X dropoff value for gapped alignment (in bits)

  [Integer]

Number of one-line descriptions (V)

  [Integer]

Number of alignments to show (B)

  [Integer]

 

 

 




DataBase administrator