Conserved Domains
Query Page

RPS-BLAST search in local Conserved Domains DataBase.

Similarity searches are performed with RPS-BLAST (BLAST 2.2.x NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the CDD DataBase you want to match.

 Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

Enter sequence here: (fasta format or raw text)

   Display full alignements in /Graphics
Before submission you must select at least one Conserved Domain DataBase .

Output Alignment: (options not available with blastx and tblastx)

Select Individual Databases:

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 CD  Pfam  Smart  COG

Blast Advanced Options:

Expect value (E)


Query sequence type


Filter query sequence (DUST with blastn, SEG with others)


X dropoff value for gapped alignment (in bits)


Number of one-line descriptions (V)


Number of alignments to show (B)





DataBase administrator