RPS-BLAST search in local Conserved Domains DataBase.

Similarity searches are performed with RPS-BLAST (BLAST 2.2.x NCBI, Altschul et al., 1997, Nucleic Acids Res. 25:3389-3402)
Submit your sequence and select the CDD DataBase you want to match.

Genomapper BLAST  psiBLAST  Mulalbla  Multalin  Genes & Genomes  BLAST (restricted)  Genome Guts  COG Guess  INTERPROScan  CDD search  Pattern search  Sequence Patterns  COG Trees  Genome Syntenizer

   Display full alignements in /Graphics
Before submission you must select at least one Conserved Domain DataBase .

Pairwise Master-slave with identities Master-slave no identities Flat master-slave Flat master-slave, no identities Master-slave no identities & blunt ends Flat master-slave, no identities & blunt ends
Output Alignment: (options not available with blastx and tblastx)

Blast Advanced Options:

Expect value (E)

  [Real] 

Query sequence type

  Protein Nucleic

Filter query sequence (DUST with blastn, SEG with others)

  True False

X dropoff value for gapped alignment (in bits)

  [Integer]

Number of one-line descriptions (V)

  [Integer]

Number of alignments to show (B)

  [Integer]